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This organism can only be binned in the context of its binning project js4906-22-2_S9. Please contact the project owner (jbanfield@berkeley.edu) to become a member and gain access.

RIFCSPLOWO2_12_FULL_Bacteroidetes_31_6_rifcsplowo2_12_scaffold_53623

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_12_FULL_Bacteroidetes_31_6_rifcsplowo2_12_scaffold_53623_1
RIFCSPLOWO2_12_FULL_Bacteroidetes_31_6_curated, Bacteroidetes, Bacteria

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comp(1..210)
DNA (210bp) protein (70aa)
Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_31_6_curated
RIFCSPLOWO2_12_FULL_Bacteroidetes_31_6_rifcsplowo2_12_scaffold_53623_2
RIFCSPLOWO2_12_FULL_Bacteroidetes_31_6_curated, Bacteroidetes, Bacteria

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267..1037
DNA (771bp) protein (257aa)
ksgA; dimethyladenosine transferase (EC:2.1.1.-); K02528 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_31_6_curated
ksgA; dimethyladenosine transferase (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase A n=1 Tax=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) RepID=RSMA_CYTH3
RIFCSPLOWO2_12_FULL_Bacteroidetes_31_6_rifcsplowo2_12_scaffold_53623_3
RIFCSPLOWO2_12_FULL_Bacteroidetes_31_6_curated, Bacteroidetes, Bacteria

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1106..2467
DNA (1362bp) protein (454aa)
magnesium transporter; K06213 magnesium transporter Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_31_6_curated
Ribosomal RNA small subunit methyltransferase A id=3826011 bin=GWF2_Bacteroidetes_33_16 species=uncultured bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Bacteroidetes_33_16 organism_group=Bacteroidetes organism_desc=Good
magnesium transporter
RIFCSPLOWO2_12_FULL_Bacteroidetes_31_6_rifcsplowo2_12_scaffold_53623_4
RIFCSPLOWO2_12_FULL_Bacteroidetes_31_6_curated, Bacteroidetes, Bacteria

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2464..3441
DNA (978bp) protein (326aa)
phosphoglycerate dehydrogenase-like oxidoreductase; K00058 D-3-phosphoglycerate dehydrogenase [EC:1.1.1.95] Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_31_6_curated
Phosphoglycerate dehydrogenase-like oxidoreductase n=1 Tax=Owenweeksia hongkongensis (strain DSM 17368 / JCM 12287 / NRRL B-23963) RepID=G8R5X9_OWEHD
phosphoglycerate dehydrogenase-like oxidoreductase
RIFCSPLOWO2_12_FULL_Bacteroidetes_31_6_rifcsplowo2_12_scaffold_53623_5
RIFCSPLOWO2_12_FULL_Bacteroidetes_31_6_curated, Bacteroidetes, Bacteria

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comp(3540..4139)
DNA (600bp) protein (200aa)
antirepressor Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_31_6_curated
Prophage antirepressor id=4453376 bin=GWF2_Lentisphaerae_38_69 species=Mannheimia haemolytica genus=Mannheimia taxon_order=Pasteurellales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_Lentisphaerae_38_69 organism_group=Lentisphaerae organism_desc=a349
antirepressor
RIFCSPLOWO2_12_FULL_Bacteroidetes_31_6_rifcsplowo2_12_scaffold_53623_6
RIFCSPLOWO2_12_FULL_Bacteroidetes_31_6_curated, Bacteroidetes, Bacteria

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comp(4869..5384)
DNA (516bp) protein (172aa)
hypothetical protein n=1 Tax=Gallionella sp. SCGC AAA018-N21 RepID=UPI000369311B
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_31_6_curated
hypothetical protein
RIFCSPLOWO2_12_FULL_Bacteroidetes_31_6_rifcsplowo2_12_scaffold_53623_7
RIFCSPLOWO2_12_FULL_Bacteroidetes_31_6_curated, Bacteroidetes, Bacteria

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comp(5535..6593)
DNA (1059bp) protein (353aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_31_6_curated
Putative uncharacterized protein id=4571860 bin=GWF2_Bacteroidetes_29_10 species=Cytophaga hutchinsonii genus=Cytophaga taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_29_10 organism_group=Bacteroidetes
hypothetical protein
RIFCSPLOWO2_12_FULL_Bacteroidetes_31_6_rifcsplowo2_12_scaffold_53623_8
RIFCSPLOWO2_12_FULL_Bacteroidetes_31_6_curated, Bacteroidetes, Bacteria

Not on your lists

comp(6631..7365)
DNA (735bp) protein (245aa)
3-deoxy-D-manno-octulosonate cytidylyltransferase (EC:2.7.7.38); K00979 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) [EC:2.7.7.38] Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_31_6_cu
3-deoxy-D-manno-octulosonate cytidylyltransferase (EC:2.7.7.38)
hypothetical protein n=1 Tax=Pedobacter arcticus RepID=UPI0002E8624F
RIFCSPLOWO2_12_FULL_Bacteroidetes_31_6_rifcsplowo2_12_scaffold_53623_9
RIFCSPLOWO2_12_FULL_Bacteroidetes_31_6_curated, Bacteroidetes, Bacteria

Not on your lists

7414..7755
DNA (342bp) protein (114aa)
DNA protecting protein DprA; K04096 DNA processing protein Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_31_6_curated
DNA protecting protein DprA id=4488751 bin=GWF2_Bacteroidetes_35_48 species=Paludibacter propionicigenes genus=Paludibacter taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_35_48 organism_group=Bacteroidetes organism_desc=a81
DNA protecting protein DprA
Displaying 9 items

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