ggKbase home page

RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_40_rifcsplowo2_12_scaffold_1131

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_40_rifcsplowo2_12_scaffold_1131_1
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..96
DNA (96bp) protein (32aa)
flagellar transcriptional activator flhc; K02402 flagellar transcriptional activator FlhC id=12550990 bin=BDI species=unknown genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
transcriptional activator FlhC Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
transcriptional activator FlhC
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_40_rifcsplowo2_12_scaffold_1131_2
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(175..729)
DNA (555bp) protein (185aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
hypothetical protein id=12551001 bin=BDI species=Acidovorax delafieldii genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
hypothetical protein
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_40_rifcsplowo2_12_scaffold_1131_3
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(726..1457)
DNA (732bp) protein (244aa)
hypothetical protein n=1 Tax=Acidovorax radicis RepID=UPI000237829C
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
hypothetical protein
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_40_rifcsplowo2_12_scaffold_1131_4
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1588..2817
DNA (1230bp) protein (410aa)
Uncharacterized protein n=2 Tax=Comamonadaceae RepID=A1W435_ACISJ
Spherulation-specific family 4 Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
Spherulation-specific family 4
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_40_rifcsplowo2_12_scaffold_1131_5
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2884..4071)
DNA (1188bp) protein (396aa)
radical SAM family protein Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
radical SAM family protein id=12551003 bin=BDI species=unknown genus=Rhodoferax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
radical SAM family protein
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_40_rifcsplowo2_12_scaffold_1131_6
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4209..4349)
DNA (141bp) protein (47aa)
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_40_rifcsplowo2_12_scaffold_1131_7
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4519..6156
DNA (1638bp) protein (546aa)
methyl-accepting chemotaxis sensory transducer with Cache sensor; K03406 methyl-accepting chemotaxis protein Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
Cache sensor-containing methyl-accepting chemotaxis sensory transducer; K03406 methyl-accepting chemotaxis protein id=12550308 bin=BDI species=Acidovorax ebreus genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
methyl-accepting chemotaxis sensory transducer with Cache sensor
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_40_rifcsplowo2_12_scaffold_1131_8
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6241..9039)
DNA (2799bp) protein (933aa)
phosphoenolpyruvate carboxylase (EC:4.1.1.31) Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
phosphoenolpyruvate carboxylase (EC:4.1.1.31) id=12551006 bin=BDI species=Acidovorax sp. CF316 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
phosphoenolpyruvate carboxylase (EC:4.1.1.31)
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_40_rifcsplowo2_12_scaffold_1131_9
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9128..10054
DNA (927bp) protein (309aa)
hemC; porphobilinogen deaminase (EC:2.5.1.61)
porphobilinogen deaminase-like Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
porphobilinogen deaminase-like id=12551007 bin=BDI species=Acidovorax sp. KKS102 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_40_rifcsplowo2_12_scaffold_1131_10
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10056..10841
DNA (786bp) protein (262aa)
uroporphyrinogen-III synthase; K01719 uroporphyrinogen-III synthase [EC:4.2.1.75] Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
uroporphyrinogen-III synthase (EC:4.2.1.75); K01719 uroporphyrinogen-III synthase [EC:4.2.1.75] id=12551008 bin=BDI species=unknown genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
uroporphyrinogen-III synthase
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_40_rifcsplowo2_12_scaffold_1131_11
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10838..11923
DNA (1086bp) protein (362aa)
hemX domain-containing protein Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
hemX domain-containing protein id=12551009 bin=BDI species=Acidovorax radicis genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
hemX domain-containing protein
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_40_rifcsplowo2_12_scaffold_1131_12
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11948..13225
DNA (1278bp) protein (426aa)
HemY domain-containing protein id=12551010 bin=BDI species=Acidovorax sp. KKS102 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
HemY domain-containing protein Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
HemY domain-containing protein
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_40_rifcsplowo2_12_scaffold_1131_13
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13469..14038
DNA (570bp) protein (190aa)
cytochrome b/b6 domain-containing protein id=12551011 bin=BDI species=Acidovorax radicis genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
cytochrome b/b6 domain-containing protein Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
cytochrome b/b6 domain-containing protein
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_40_rifcsplowo2_12_scaffold_1131_14
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14071..14643
DNA (573bp) protein (191aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
hypothetical protein id=12551012 bin=BDI species=Acidovorax delafieldii genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
hypothetical protein
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_40_rifcsplowo2_12_scaffold_1131_15
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14710..15285
DNA (576bp) protein (192aa)
hypothetical protein id=12551013 bin=BDI species=Acidovorax sp. KKS102 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
hypothetical protein
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_40_rifcsplowo2_12_scaffold_1131_16
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15392..16393)
DNA (1002bp) protein (334aa)
araC family transcriptional regulator Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
araC family transcriptional regulator id=12551014 bin=BDI species=Pseudomonas alcaligenes genus=Pseudomonas taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
araC family transcriptional regulator
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_40_rifcsplowo2_12_scaffold_1131_17
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16528..17463
DNA (936bp) protein (312aa)
bile acid:sodium symporter; K03453 bile acid:Na+ symporter, BASS family Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
bile acid:sodium symporter; K03453 bile acid:Na+ symporter, BASS family id=12551015 bin=BDI species=Rhodopseudomonas palustris genus=Rhodopseudomonas taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
bile acid:sodium symporter
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_40_rifcsplowo2_12_scaffold_1131_18
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17460..18437
DNA (978bp) protein (326aa)
NAD-dependent epimerase/dehydratase; K01784 UDP-glucose 4-epimerase [EC:5.1.3.2] Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
Nucleoside-diphosphate-sugar epimerase n=1 Tax=Acidovorax sp. CF316 RepID=J1EDG3_9BURK
NAD-dependent epimerase/dehydratase
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_40_rifcsplowo2_12_scaffold_1131_19
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18434..19270
DNA (837bp) protein (279aa)
Short-chain dehydrogenase n=1 Tax=Pseudomonas aeruginosa BL22 RepID=U9FTB6_PSEAI
short chain dehydrogenase Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
short chain dehydrogenase
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_40_rifcsplowo2_12_scaffold_1131_20
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19267..21054
DNA (1788bp) protein (596aa)
streptogramin lyase-like protein Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
streptogramin lyase-like protein id=12551018 bin=BDI species=Herbaspirillum sp. JC206 genus=Herbaspirillum taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
streptogramin lyase-like protein
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_40_rifcsplowo2_12_scaffold_1131_21
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21051..22247
DNA (1197bp) protein (399aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
putative signal peptide id=12551020 bin=BDI species=Herbaspirillum sp. JC206 genus=Herbaspirillum taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
putative signal peptide
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_40_rifcsplowo2_12_scaffold_1131_22
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


22346..25234
DNA (2889bp) protein (963aa)
valS; valyl-tRNA ligase (EC:6.1.1.9) Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
valS; valyl-tRNA ligase (EC:6.1.1.9)
Valine--tRNA ligase n=1 Tax=Acidovorax sp. KKS102 RepID=K0IDF5_9BURK
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_40_rifcsplowo2_12_scaffold_1131_23
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25436..26320
DNA (885bp) protein (295aa)
UTP-glucose-1-phosphate uridylyltransferase (EC:2.7.7.9); K00963 UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9] Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
UTP-glucose-1-phosphate uridylyltransferase (EC:2.7.7.9)
UTP--glucose-1-phosphate uridylyltransferase n=1 Tax=Acidovorax radicis RepID=UPI00023782AE
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_40_rifcsplowo2_12_scaffold_1131_24
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26498..26725)
DNA (228bp) protein (76aa)
sira family protein id=12551028 bin=BDI species=Acidovorax radicis genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
sira family protein Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
sira family protein
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_40_rifcsplowo2_12_scaffold_1131_25
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26730..27299)
DNA (570bp) protein (190aa)
NUDIX hydrolase Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
NUDIX hydrolase id=12551029 bin=BDI species=Acidovorax sp. CF316 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
NUDIX hydrolase
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_40_rifcsplowo2_12_scaffold_1131_26
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27359..28261)
DNA (903bp) protein (301aa)
cysM; cysteine synthase B (EC:2.5.1.47) Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
cysM; cysteine synthase B (EC:2.5.1.47) id=12551030 bin=BDI species=Acidovorax radicis genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
cysM; cysteine synthase B (EC:2.5.1.47)
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_40_rifcsplowo2_12_scaffold_1131_trna_1
unknown

Not on your lists

28302..28383
DNA (82bp)
transferRNA
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_40_rifcsplowo2_12_scaffold_1131_27
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28601..28837
DNA (237bp) protein (79aa)
Putative uncharacterized protein n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0Q4Q3_ACIAP
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
hypothetical protein
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_40_rifcsplowo2_12_scaffold_1131_28
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28850..29299
DNA (450bp) protein (150aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0HY73_9BURK
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
hypothetical protein
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_40_rifcsplowo2_12_scaffold_1131_29
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29487..31214)
DNA (1728bp) protein (576aa)
Restriction modification system DNA specificity domain n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y675_LEPCP
restriction modification system DNA specificity subunit Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
restriction modification system DNA specificity subunit rbh
Displaying items 1-30 of 33 in total

View Taxonomy