ggKbase home page

RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_rifcsplowo2_12_scaffold_13004

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_rifcsplowo2_12_scaffold_13004_1
RLO_Elusimicrobia_59_9, Elusimicrobia, Bacteria

Not on your lists

2..265
DNA (264bp) protein (88aa)
Putative Fumarate and nitrate reduction regulatory protein Tax=RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_curated
Putative Fumarate and nitrate reduction regulatory protein id=2268749 bin=GWA2_Elusimicrobia_66_18 species=uncultured candidate division OP1 bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Elusimicrobia_66_18 organism_group=Elusimicrobia organism_desc=Part of new group in this phylum
RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_rifcsplowo2_12_scaffold_13004_2
RLO_Elusimicrobia_59_9, Elusimicrobia, Bacteria

Not on your lists

655..885
DNA (231bp) protein (77aa)
Tax=RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_curated
RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_rifcsplowo2_12_scaffold_13004_3
RLO_Elusimicrobia_59_9, Elusimicrobia, Bacteria

Not on your lists

comp(1198..1821)
DNA (624bp) protein (208aa)
uracil phosphoribosyltransferase (EC:2.4.2.9); K00761 uracil phosphoribosyltransferase [EC:2.4.2.9] Tax=RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_curated
uracil phosphoribosyltransferase (EC:2.4.2.9)
Uracil phosphoribosyltransferase id=2268752 bin=GWA2_Elusimicrobia_66_18 species=Mahella australiensis genus=Mahella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Elusimicrobia_66_18 organism_group=Elusimicrobia organism_desc=Part of new group in this phylum
RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_rifcsplowo2_12_scaffold_13004_4
RLO_Elusimicrobia_59_9, Elusimicrobia, Bacteria

Not on your lists

comp(1826..3133)
DNA (1308bp) protein (436aa)
thymidine phosphorylase (EC:2.4.2.2 2.4.2.4); K00756 pyrimidine-nucleoside phosphorylase [EC:2.4.2.2] Tax=RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_curated
thymidine phosphorylase (EC:2.4.2.2 2.4.2.4)
Pyrimidine nucleoside phosphorylase id=3976348 bin=GWA2_Elusimicrobia_69_24 species=Cystobacter fuscus genus=Cystobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_rifcsplowo2_12_scaffold_13004_5
RLO_Elusimicrobia_59_9, Elusimicrobia, Bacteria

Not on your lists

comp(3130..3978)
DNA (849bp) protein (283aa)
purine nucleoside phosphorylase Tax=RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_curated
Purine nucleoside phosphorylase id=2899287 bin=GWA2_Elusi-like_A8_64_40 species=Elusimicrobium minutum genus=Elusimicrobium taxon_order=Elusimicrobiales taxon_class=Elusimicrobia phylum=Elusimicrobia tax=GWA2_Elusi-like_A8_64_40 organism_group=Elusimicrobia
purine nucleoside phosphorylase
RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_rifcsplowo2_12_scaffold_13004_6
RLO_Elusimicrobia_59_9, Elusimicrobia, Bacteria

Not on your lists

4023..4865
DNA (843bp) protein (281aa)
transketolase, N-terminal subunit; K00615 transketolase [EC:2.2.1.1] Tax=RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_curated
Transketolase id=2268757 bin=GWA2_Elusimicrobia_66_18 species=Desulfotomaculum gibsoniae genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Elusimicrobia_66_18 organism_group=Elusimicrobia organism_desc=Part of new group in this phylum
transketolase, N-terminal subunit
RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_rifcsplowo2_12_scaffold_13004_7
RLO_Elusimicrobia_59_9, Elusimicrobia, Bacteria

Not on your lists

4870..5811
DNA (942bp) protein (314aa)
transketolase, alpha subunit Tax=RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_curated
Transketolase central region id=3976357 bin=GWA2_Elusimicrobia_69_24 species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
transketolase, alpha subunit
RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_rifcsplowo2_12_scaffold_13004_8
RLO_Elusimicrobia_59_9, Elusimicrobia, Bacteria

Not on your lists

comp(6034..6396)
DNA (363bp) protein (121aa)
UPF0102 protein ELI_2872 n=1 Tax=Eubacterium limosum (strain KIST612) RepID=E3GNH6_EUBLK
endonuclease; K07460 putative endonuclease Tax=RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_curated
endonuclease
RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_rifcsplowo2_12_scaffold_13004_9
RLO_Elusimicrobia_59_9, Elusimicrobia, Bacteria

Not on your lists

comp(6386..7042)
DNA (657bp) protein (219aa)
ribonuclease h (EC:3.1.26.4); K03470 ribonuclease HII [EC:3.1.26.4] Tax=RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_curated
ribonuclease h (EC:3.1.26.4)
Ribonuclease HII n=1 Tax=Acidovorax sp. CF316 RepID=J0KIS4_9BURK
RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_rifcsplowo2_12_scaffold_13004_10
RLO_Elusimicrobia_59_9, Elusimicrobia, Bacteria

Not on your lists


comp(7052..7498)
DNA (447bp) protein (149aa)
50S ribosomal protein L19 n=1 Tax=Desmospora sp. 8437 RepID=F5SCP6_9BACL
rplS; 50S ribosomal protein L19; K02884 large subunit ribosomal protein L19 Tax=RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_curated
rplS; 50S ribosomal protein L19
RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_rifcsplowo2_12_scaffold_13004_11
RLO_Elusimicrobia_59_9, Elusimicrobia, Bacteria

Not on your lists

comp(7509..8177)
DNA (669bp) protein (223aa)
trmD; tRNA (guanine-N(1)-)-methyltransferase (EC:2.1.1.31); K00554 tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] Tax=RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_curated
tRNA (guanine-N(1)-)-methyltransferase id=3976458 bin=GWA2_Elusimicrobia_69_24 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
trmD; tRNA (guanine-N(1)-)-methyltransferase
RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_rifcsplowo2_12_scaffold_13004_12
RLO_Elusimicrobia_59_9, Elusimicrobia, Bacteria

Not on your lists

comp(8187..8414)
DNA (228bp) protein (76aa)
UPF0109 protein SpiGrapes_0498 n=1 Tax=Sphaerochaeta pleomorpha (strain ATCC BAA-1885 / DSM 22778 / Grapes) RepID=G8QWQ9_SPHPG
putative RNA-binding protein (contains KH domain); K06960 Tax=RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_curated
putative RNA-binding protein (contains KH domain)
RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_rifcsplowo2_12_scaffold_13004_13
RLO_Elusimicrobia_59_9, Elusimicrobia, Bacteria

Not on your lists


comp(8597..8884)
DNA (288bp) protein (96aa)
rpsP; 30S ribosomal protein S16; K02959 small subunit ribosomal protein S16 Tax=RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_curated
30S ribosomal protein S16 id=3602522 bin=GWA2_Elusi_like_61_42 species=Elusimicrobium minutum genus=Elusimicrobium taxon_order=Elusimicrobiales taxon_class=Elusimicrobia phylum=Elusimicrobia tax=GWA2_Elusi_like_61_42 organism_group=Elusimicrobia organism_desc=Possibly not Elusi
S16-like 30S ribosomal protein
RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_rifcsplowo2_12_scaffold_13004_14
RLO_Elusimicrobia_59_9, Elusimicrobia, Bacteria

Not on your lists

comp(9219..9905)
DNA (687bp) protein (229aa)
ribulose-phosphate 3-epimerase (EC:5.1.3.1); K01783 ribulose-phosphate 3-epimerase [EC:5.1.3.1] Tax=RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_curated
rpe; ribulose-phosphate 3-epimerase Rpe (EC:5.1.3.1)
Ribulose-phosphate 3-epimerase id=3602518 bin=GWA2_Elusi_like_61_42 species=Elusimicrobium minutum genus=Elusimicrobium taxon_order=Elusimicrobiales taxon_class=Elusimicrobia phylum=Elusimicrobia tax=GWA2_Elusi_like_61_42 organism_group=Elusimicrobia organism_desc=Possibly not Elusi
RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_rifcsplowo2_12_scaffold_13004_15
RLO_Elusimicrobia_59_9, Elusimicrobia, Bacteria

Not on your lists

comp(9947..10102)
DNA (156bp) protein (52aa)
PASTA domain containing protein
PASTA domain containing protein Tax=RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_curated
PASTA domain containing protein id=3976462 bin=GWA2_Elusimicrobia_69_24 species=Elusimicrobium minutum genus=Elusimicrobium taxon_order=Elusimicrobiales taxon_class=Elusimicrobia phylum=Elusimicrobia tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_rifcsplowo2_12_scaffold_13004_16
RLO_Elusimicrobia_59_9, Elusimicrobia, Bacteria

Not on your lists

comp(10116..10844)
DNA (729bp) protein (243aa)
hypothetical protein ; K08884 serine/threonine protein kinase, bacterial [EC:2.7.11.1] Tax=RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_curated
PASTA domain containing protein id=3976462 bin=GWA2_Elusimicrobia_69_24 species=Elusimicrobium minutum genus=Elusimicrobium taxon_order=Elusimicrobiales taxon_class=Elusimicrobia phylum=Elusimicrobia tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
hypothetical protein
RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_rifcsplowo2_12_scaffold_13004_17
RLO_Elusimicrobia_59_9, Elusimicrobia, Bacteria

Not on your lists

comp(10874..11800)
DNA (927bp) protein (309aa)
methionyl-tRNA formyltransferase; K00604 methionyl-tRNA formyltransferase [EC:2.1.2.9] Tax=RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_curated
Methionyl-tRNA formyltransferase id=2268793 bin=GWA2_Elusimicrobia_66_18 species=Clostridium methylpentosum genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Elusimicrobia_66_18 organism_group=Elusimicrobia organism_desc=Part of new group in this phylum
methionyl-tRNA formyltransferase
RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_rifcsplowo2_12_scaffold_13004_18
RLO_Elusimicrobia_59_9, Elusimicrobia, Bacteria

Not on your lists

comp(11814..12368)
DNA (555bp) protein (185aa)
N-formylmethionyl-tRNA deformylase (EC:3.5.1.88); K01462 peptide deformylase [EC:3.5.1.88] Tax=RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_curated
N-formylmethionyl-tRNA deformylase (EC:3.5.1.88)
Peptide deformylase id=2268794 bin=GWA2_Elusimicrobia_66_18 species=Legionella pneumophila genus=Legionella taxon_order=Legionellales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Elusimicrobia_66_18 organism_group=Elusimicrobia organism_desc=Part of new group in this phylum
RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_rifcsplowo2_12_scaffold_13004_19
RLO_Elusimicrobia_59_9, Elusimicrobia, Bacteria

Not on your lists

comp(12393..13109)
DNA (717bp) protein (239aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_curated
hypothetical protein id=2149539 bin=GWA2_Elusimicrobia_51_34 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Elusimicrobia_51_34 organism_group=Elusimicrobia
Displaying 19 items

View Taxonomy