ggKbase home page

RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_rifcsplowo2_12_scaffold_10334

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_rifcsplowo2_12_scaffold_10334_1
RLO_Elusimicrobia_59_9, Elusimicrobia, Bacteria

Not on your lists

comp(1..474)
DNA (474bp) protein (158aa)
NADH ubiquinone oxidoreductase 20 kDa subunit n=1 Tax=Thiorhodococcus drewsii AZ1 RepID=G2E6E4_9GAMM
hycG; hycG protein Tax=RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_curated
hycG; hycG protein
RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_rifcsplowo2_12_scaffold_10334_2
RLO_Elusimicrobia_59_9, Elusimicrobia, Bacteria

Not on your lists

comp(481..2067)
DNA (1587bp) protein (529aa)
Ni,Fe-hydrogenase III large subunit n=1 Tax=Desulfosporosinus youngiae DSM 17734 RepID=H5XT90_9FIRM
hydrogenase, large subunit-like protein (HycE-like) Tax=RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_curated
hydrogenase, large subunit-like protein (HycE-like)
RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_rifcsplowo2_12_scaffold_10334_3
RLO_Elusimicrobia_59_9, Elusimicrobia, Bacteria

Not on your lists

comp(2060..3535)
DNA (1476bp) protein (492aa)
hydrogenase, membrane subunit 1-like protein (EchA-like); K12141 hydrogenase-4 component F [EC:1.-.-.-] Tax=RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_curated
Hydrogenase, membrane subunit 1-like protein (EchA-like) n=1 Tax=Uncultured methanogenic archaeon RC-I RepID=Q0W2B8_UNCMA
hydrogenase, membrane subunit 1-like protein (EchA-like)
RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_rifcsplowo2_12_scaffold_10334_4
RLO_Elusimicrobia_59_9, Elusimicrobia, Bacteria

Not on your lists

comp(3538..4206)
DNA (669bp) protein (223aa)
hydrogenase 4 membrane component (E); K12140 hydrogenase-4 component E [EC:1.-.-.-] Tax=RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_curated
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI00035D7F03
hydrogenase 4 membrane component (E)
RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_rifcsplowo2_12_scaffold_10334_5
RLO_Elusimicrobia_59_9, Elusimicrobia, Bacteria

Not on your lists

comp(4223..5176)
DNA (954bp) protein (318aa)
Putative Formate hydrogenlyase, membrane subunit n=1 Tax=Candidatus Nitrospira defluvii RepID=D8P8U5_9BACT
putative formate hydrogenlyase, membrane subunit Tax=RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_curated
putative formate hydrogenlyase, membrane subunit
RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_rifcsplowo2_12_scaffold_10334_6
RLO_Elusimicrobia_59_9, Elusimicrobia, Bacteria

Not on your lists

comp(5173..7206)
DNA (2034bp) protein (678aa)
NADH dehydrogenase (quinone) (EC:1.6.99.5) Tax=RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_curated
NADH dehydrogenase (quinone) (EC:1.6.99.5)
Formate hydrogenlyase subunit 3/multisubunit Na+/H+ antiporter, MnhD subunit n=1 Tax=Desulfosporosinus youngiae DSM 17734 RepID=H5Y2T2_9FIRM
RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_rifcsplowo2_12_scaffold_10334_7
RLO_Elusimicrobia_59_9, Elusimicrobia, Bacteria

Not on your lists

comp(7423..7773)
DNA (351bp) protein (117aa)
regulatory protein ArsR; K03892 ArsR family transcriptional regulator Tax=RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_curated
Regulatory protein ArsR id=3432924 bin=GWA2_Elusimicrobia_66_18 species=Desulfitobacterium metallireducens genus=Desulfitobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Elusimicrobia_66_18 organism_group=Elusimicrobia organism_desc=Part of new group in this phylum
regulatory protein ArsR
RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_rifcsplowo2_12_scaffold_10334_8
RLO_Elusimicrobia_59_9, Elusimicrobia, Bacteria

Not on your lists

7974..9089
DNA (1116bp) protein (372aa)
CDP-glucose 4,6-dehydratase; K01709 CDP-glucose 4,6-dehydratase [EC:4.2.1.45] Tax=RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_curated
CDP-glucose 4,6-dehydratase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XIP5_9BACT
CDP-glucose 4,6-dehydratase
RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_rifcsplowo2_12_scaffold_10334_9
RLO_Elusimicrobia_59_9, Elusimicrobia, Bacteria

Not on your lists

9073..10080
DNA (1008bp) protein (336aa)
Tax=RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_curated
RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_rifcsplowo2_12_scaffold_10334_10
RLO_Elusimicrobia_59_9, Elusimicrobia, Bacteria

Not on your lists

comp(10235..11341)
DNA (1107bp) protein (369aa)
hypothetical protein n=1 Tax=Pseudanabaena sp. PCC 6802 RepID=UPI0003499641
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_curated
hypothetical protein
RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_rifcsplowo2_12_scaffold_10334_11
RLO_Elusimicrobia_59_9, Elusimicrobia, Bacteria

Not on your lists

comp(11361..12038)
DNA (678bp) protein (226aa)
winged helix family two component transcriptional regulator; K07657 two-component system, OmpR family, phosphate regulon response regulator PhoB Tax=RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_curated
Two component transcriptional regulator, winged helix family id=4959097 bin=GWA2_Elusimicrobia_69_24 species=unknown genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
winged helix family two component transcriptional regulator
RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_rifcsplowo2_12_scaffold_10334_12
RLO_Elusimicrobia_59_9, Elusimicrobia, Bacteria

Not on your lists

12330..13355
DNA (1026bp) protein (342aa)
putative SAM-dependent methyltransferase; K06969 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] Tax=RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_curated
Putative SAM-dependent methyltransferase n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QPZ8_AZOSU
putative SAM-dependent methyltransferase
RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_rifcsplowo2_12_scaffold_10334_13
RLO_Elusimicrobia_59_9, Elusimicrobia, Bacteria

Not on your lists

comp(13359..13652)
DNA (294bp) protein (98aa)
Uncharacterized protein n=1 Tax=Marinithermus hydrothermalis (strain DSM 14884 / JCM 11576 / T1) RepID=F2NQR0_MARHT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_curated
hypothetical protein
RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_rifcsplowo2_12_scaffold_10334_14
RLO_Elusimicrobia_59_9, Elusimicrobia, Bacteria

Not on your lists

comp(13631..14965)
DNA (1335bp) protein (445aa)
Uncharacterized protein n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MG65_9BACT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_curated
hypothetical protein
RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_rifcsplowo2_12_scaffold_10334_15
RLO_Elusimicrobia_59_9, Elusimicrobia, Bacteria

Not on your lists

comp(14962..15741)
DNA (780bp) protein (260aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_curated
Uncharacterized protein id=2684560 bin=GWF2_Methylomirabilis_70_14 species=Nitrolancetus hollandicus genus=Nitrolancetus taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_rifcsplowo2_12_scaffold_10334_16
RLO_Elusimicrobia_59_9, Elusimicrobia, Bacteria

Not on your lists

comp(16008..16661)
DNA (654bp) protein (218aa)
Crp/Fnr family transcriptional regulator Tax=RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_curated
Nitrite and nitric oxide reductase transcriptional regulator (Crp/Fnr family) id=3525385 bin=GWA2_Elusimicrobia_66_18 species=Azospirillum lipoferum genus=Azospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Elusimicrobia_66_18 organism_group=Elusimicrobia organism_desc=Part of new group in this phylum
Crp/Fnr family transcriptional regulator
RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_rifcsplowo2_12_scaffold_10334_17
RLO_Elusimicrobia_59_9, Elusimicrobia, Bacteria

Not on your lists

comp(16678..19053)
DNA (2376bp) protein (792aa)
PAS/PAC sensor hybrid histidine kinase Tax=RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_curated
PAS/PAC sensor hybrid histidine kinase id=4975906 bin=GWA2_Elusimicrobia_69_24 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
PAS/PAC sensor hybrid histidine kinase
RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_rifcsplowo2_12_scaffold_10334_18
RLO_Elusimicrobia_59_9, Elusimicrobia, Bacteria

Not on your lists

comp(19176..19613)
DNA (438bp) protein (146aa)
CoA-binding domain-containing protein; K06929 Tax=RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_curated
CoA-binding domain protein id=3525356 bin=GWA2_Elusimicrobia_66_18 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Elusimicrobia_66_18 organism_group=Elusimicrobia organism_desc=Part of new group in this phylum
CoA-binding domain-containing protein
RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_rifcsplowo2_12_scaffold_10334_19
RLO_Elusimicrobia_59_9, Elusimicrobia, Bacteria

Not on your lists

19728..20075
DNA (348bp) protein (116aa)
regulatory protein ArsR; K03892 ArsR family transcriptional regulator Tax=RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_curated
Regulatory protein ArsR id=2824118 bin=GWA2_Elusimicrobia_66_18 species=Singulisphaera acidiphila genus=Singulisphaera taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Elusimicrobia_66_18 organism_group=Elusimicrobia organism_desc=Part of new group in this phylum
regulatory protein ArsR
RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_rifcsplowo2_12_scaffold_10334_20
RLO_Elusimicrobia_59_9, Elusimicrobia, Bacteria

Not on your lists

20075..20470
DNA (396bp) protein (132aa)
protein-tyrosine phosphatase Tax=RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_curated
protein-tyrosine phosphatase id=24426365 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Dyella japonica genus=Dyella taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
protein-tyrosine phosphatase
RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_rifcsplowo2_12_scaffold_10334_21
RLO_Elusimicrobia_59_9, Elusimicrobia, Bacteria

Not on your lists

20526..21602
DNA (1077bp) protein (359aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Elusimicrobia_59_9_curated
Putative Arsenite resistance protein ArsB id=2854222 bin=GWC2_Deltaproteobacteria_66_88 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Deltaproteobacteria_66_88 organism_group=Deltaproteobacteria
hypothetical protein
Displaying 21 items

View Taxonomy