ggKbase home page

RIFOXYA2_FULL_CP_36_21_rifoxya2_full_scaffold_170

Search features with annotation key words

Displaying items 1-30 of 60 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFOXYA2_FULL_CP_36_21_rifoxya2_full_scaffold_170_1
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(2..511)
DNA (510bp) protein (170aa)
Phosphate-binding protein n=1 Tax=Thermaerobacter subterraneus DSM 13965 RepID=K6PRA3_9FIRM
phosphate ABC transporter substrate-binding protein; K02040 phosphate transport system substrate-binding protein Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
phosphate ABC transporter substrate-binding protein
RIFOXYA2_FULL_CP_36_21_rifoxya2_full_scaffold_170_2
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(610..1851)
DNA (1242bp) protein (414aa)
Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
RIFOXYA2_FULL_CP_36_21_rifoxya2_full_scaffold_170_3
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

2209..3126
DNA (918bp) protein (306aa)
cation diffusion facilitator family transporter Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
Cation efflux system protein id=4022444 bin=GWF2_OP9_related_35_9 species=unknown genus=unknown taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_OP9_related_35_9 organism_group=OP9 (Atribacteria)
cation diffusion facilitator family transporter
RIFOXYA2_FULL_CP_36_21_rifoxya2_full_scaffold_170_4
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(3154..4563)
DNA (1410bp) protein (470aa)
multi-sensor signal transduction histidine kinase; K07636 two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
Multi-sensor signal transduction histidine kinase n=1 Tax=Thermincola potens (strain JR) RepID=D5X969_THEPJ
multi-sensor signal transduction histidine kinase
RIFOXYA2_FULL_CP_36_21_rifoxya2_full_scaffold_170_5
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(4560..5258)
DNA (699bp) protein (233aa)
Phosphate regulon transcriptional regulatory protein PhoB (SphR) n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CG33_9CLOT
response regulator with CheY-like receiver domain and winged-helix DNA-binding domain Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
RIFOXYA2_FULL_CP_36_21_rifoxya2_full_scaffold_170_6
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(5286..7112)
DNA (1827bp) protein (609aa)
Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
RIFOXYA2_FULL_CP_36_21_rifoxya2_full_scaffold_170_7
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(7212..8069)
DNA (858bp) protein (286aa)
metF; 5,10-methylenetetrahydrofolate reductase (EC:1.5.1.20); K00297 methylenetetrahydrofolate reductase (NADPH) [EC:1.5.1.20] Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
metF; 5,10-methylenetetrahydrofolate reductase (EC:1.5.1.20)
Methylenetetrahydrofolate reductase n=1 Tax=Sulfurihydrogenibium yellowstonense SS-5 RepID=C4FKN7_9AQUI
RIFOXYA2_FULL_CP_36_21_rifoxya2_full_scaffold_170_8
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(8073..8432)
DNA (360bp) protein (120aa)
Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
RIFOXYA2_FULL_CP_36_21_rifoxya2_full_scaffold_170_9
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(8467..9960)
DNA (1494bp) protein (498aa)
lysS; lysyl-tRNA synthetase (EC:6.1.1.6); K04567 lysyl-tRNA synthetase, class II [EC:6.1.1.6] Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
lysyl-tRNA synthetase (class II); K04567 lysyl-tRNA synthetase, class II [EC:6.1.1.6] id=24609638 bin=RAAC11 species=Clostridium clariflavum genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RAAC11 organism_group=Unknown_CP
lysS; lysyl-tRNA synthetase (EC:6.1.1.6)
RIFOXYA2_FULL_CP_36_21_rifoxya2_full_scaffold_170_10
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(10021..12102)
DNA (2082bp) protein (694aa)
Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
RIFOXYA2_FULL_CP_36_21_rifoxya2_full_scaffold_170_11
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(12138..12272)
DNA (135bp) protein (45aa)
Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
RIFOXYA2_FULL_CP_36_21_rifoxya2_full_scaffold_170_12
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

12591..13367
DNA (777bp) protein (259aa)
Uncharacterized protein n=1 Tax=Dictyostelium discoideum RepID=Q556Y6_DICDI
hypothetical protein Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
glycosyl hydrolase
RIFOXYA2_FULL_CP_36_21_rifoxya2_full_scaffold_170_13
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(13345..14067)
DNA (723bp) protein (241aa)
putative Baf family transcriptional acitvator (EC:2.7.1.33); K03525 type III pantothenate kinase [EC:2.7.1.33] Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
Baf family transcriptional activator (EC:2.7.1.33)
Type III pantothenate kinase n=6 Tax=Clostridium thermocellum RepID=COAX_CLOTH
RIFOXYA2_FULL_CP_36_21_rifoxya2_full_scaffold_170_14
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

14330..14497
DNA (168bp) protein (56aa)
Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
RIFOXYA2_FULL_CP_36_21_rifoxya2_full_scaffold_170_15
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(14568..15476)
DNA (909bp) protein (303aa)
Pseudouridine synthase n=1 Tax=Clostridium pasteurianum BC1 RepID=R4KB22_CLOPA
pseudouridine synthase, RluA family Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
pseudouridine synthase, RluA family
RIFOXYA2_FULL_CP_36_21_rifoxya2_full_scaffold_170_16
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(15442..16179)
DNA (738bp) protein (246aa)
prolipoprotein diacylglyceryl transferase; K13292 phosphatidylglycerol:prolipoprotein diacylglycerol transferase [EC:2.-.-.-] Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
Prolipoprotein diacylglyceryl transferase n=1 Tax=uncultured Desulfobacterium sp. RepID=E1YJD4_9DELT
prolipoprotein diacylglyceryl transferase
RIFOXYA2_FULL_CP_36_21_rifoxya2_full_scaffold_170_17
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(16181..16612)
DNA (432bp) protein (144aa)
lipoprotein signal peptidase; K03101 signal peptidase II [EC:3.4.23.36] Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
Lipoprotein signal peptidase n=1 Tax=Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P) RepID=D9S2Z9_THEOJ
lipoprotein signal peptidase
RIFOXYA2_FULL_CP_36_21_rifoxya2_full_scaffold_170_18
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(16613..16891)
DNA (279bp) protein (93aa)
Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
RIFOXYA2_FULL_CP_36_21_rifoxya2_full_scaffold_170_19
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(16978..18237)
DNA (1260bp) protein (420aa)
ahcY; S-adenosyl-L-homocysteine hydrolase (EC:3.3.1.1); K01251 adenosylhomocysteinase [EC:3.3.1.1] Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
ahcY; S-adenosyl-L-homocysteine hydrolase (EC:3.3.1.1)
Adenosylhomocysteinase n=1 Tax=planctomycete KSU-1 RepID=I3IPQ1_9PLAN
RIFOXYA2_FULL_CP_36_21_rifoxya2_full_scaffold_170_20
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(18313..18525)
DNA (213bp) protein (71aa)
Putative uncharacterized protein n=1 Tax=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) RepID=B5YKT1_THEYD
hypothetical protein Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
hypothetical protein
RIFOXYA2_FULL_CP_36_21_rifoxya2_full_scaffold_170_21
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(18515..18772)
DNA (258bp) protein (86aa)
Putative uncharacterized protein n=1 Tax=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) RepID=B5YCQ6_DICT6
hypothetical protein Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
hypothetical protein
RIFOXYA2_FULL_CP_36_21_rifoxya2_full_scaffold_170_22
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(18805..20187)
DNA (1383bp) protein (461aa)
two component, sigma54 specific, Fis family transcriptional regulator Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
AtoC; response regulator; K07714 two-component system, NtrC family, response regulator AtoC id=14626375 bin=bin7_NC10_sister species=Desulfotignum phosphitoxidans genus=Desulfotignum taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
two component, sigma54 specific, Fis family transcriptional regulator
RIFOXYA2_FULL_CP_36_21_rifoxya2_full_scaffold_170_23
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(20184..21533)
DNA (1350bp) protein (450aa)
rpoN; RNA polymerase sigma-54 factor (EC:2.7.7.6); K03092 RNA polymerase sigma-54 factor Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
rpoN; RNA polymerase sigma-54 factor (EC:2.7.7.6)
RNA polymerase, sigma 54 subunit, RpoN id=4368345 bin=GWF2_OP9-related_38_17 species=Alkaliphilus oremlandii genus=Alkaliphilus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_OP9-related_38_17 organism_group=RBX1 organism_desc=Same as D2_39_127
RIFOXYA2_FULL_CP_36_21_rifoxya2_full_scaffold_170_24
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(21599..26911)
DNA (5313bp) protein (1771aa)
Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
RIFOXYA2_FULL_CP_36_21_rifoxya2_full_scaffold_170_25
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists


26968..27843
DNA (876bp) protein (292aa)
30S ribosomal protein S2 n=1 Tax=Bacillus aquimaris RepID=F5B4L5_9BACI
30S ribosomal protein S2; K02967 small subunit ribosomal protein S2 Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
30S ribosomal protein S2
RIFOXYA2_FULL_CP_36_21_rifoxya2_full_scaffold_170_26
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

27890..28492
DNA (603bp) protein (201aa)
Elongation factor Ts n=1 Tax=Moorella thermoacetica (strain ATCC 39073) RepID=EFTS_MOOTA
tsf; elongation factor Ts; K02357 elongation factor Ts Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
tsf; elongation factor Ts
RIFOXYA2_FULL_CP_36_21_rifoxya2_full_scaffold_170_27
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(28489..28734)
DNA (246bp) protein (82aa)
DNA polymerase beta domain protein region n=1 Tax=Methylomonas methanica (strain MC09) RepID=G0A4Q5_METMM
DNA polymerase beta domain-containing protein Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
DNA polymerase beta domain-containing protein
RIFOXYA2_FULL_CP_36_21_rifoxya2_full_scaffold_170_28
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

28871..31573
DNA (2703bp) protein (901aa)
DNA polymerase I n=1 Tax=candidate division ZIXI bacterium RBG-1 RepID=T0L6Y4_9BACT
DNA polymerase I Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
DNA polymerase I
RIFOXYA2_FULL_CP_36_21_rifoxya2_full_scaffold_170_29
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(31583..33745)
DNA (2163bp) protein (721aa)
GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase)(ppGpp synthetase I) ((P)ppGpp synthetase) (EC:2.7.6.5); K00951 GTP pyrophosphokinase [EC:2.7.6.5] Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase)(ppGpp synthetase I) ((P)ppGpp synthetase) (EC:2.7.6.5)
GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase)(PpGpp synthetase I) ((P)ppGpp synthetase) n=1 Tax=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) RepID=B5YDT3_DICT6
RIFOXYA2_FULL_CP_36_21_rifoxya2_full_scaffold_170_30
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(33783..35957)
DNA (2175bp) protein (725aa)
Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
Displaying items 1-30 of 60 in total

View Taxonomy