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RBG_16_scaffold_9884_curated

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RBG_16_scaffold_9884_curated_1
RBG_16_Deltaproteobacteria_42_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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588..836
DNA (249bp) protein (83aa)
Putative Nif-specific regulatory protein id=3637639 bin=GWC2_Deltaproteobacteria_42_51 species=ACD39 genus=ACD39 taxon_order=ACD39 taxon_class=ACD39 phylum=unknown tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
Tax=RBG_16_Deltaproteobacteria_42_7_curated
RBG_16_scaffold_9884_curated_2
RBG_16_Deltaproteobacteria_42_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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986..1237
DNA (252bp) protein (84aa)
Molybdopterin MPT converting factor id=3637634 bin=GWC2_Deltaproteobacteria_42_51 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
moaD; molybdopterin converting factor small subunit; K03636 molybdopterin synthase sulfur carrier subunit
Tax=RBG_16_Deltaproteobacteria_42_7_curated
RBG_16_scaffold_9884_curated_3
RBG_16_Deltaproteobacteria_42_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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1330..1749
DNA (420bp) protein (140aa)
moaE; molybdopterin converting factor large subunit; K03635 molybdopterin synthase catalytic subunit [EC:2.-.-.-]
Molybdopterin converting factor, large subunit id=3637632 bin=GWC2_Deltaproteobacteria_42_51 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
Tax=RBG_16_Deltaproteobacteria_42_7_curated
RBG_16_scaffold_9884_curated_4
RBG_16_Deltaproteobacteria_42_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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1839..2330
DNA (492bp) protein (164aa)
Hypothetical cytosolic protein id=3637629 bin=GWC2_Deltaproteobacteria_42_51 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
cytoplasmic protein
Tax=RBG_16_Deltaproteobacteria_42_7_curated
RBG_16_scaffold_9884_curated_5
RBG_16_Deltaproteobacteria_42_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(2393..2866)
DNA (474bp) protein (158aa)
Histidine triad (HIT) protein id=4309591 bin=GWC2_Deltaproteobacteria_42_51 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
histidine triad (HIT) protein
Tax=RBG_16_Deltaproteobacteria_42_7_curated
RBG_16_scaffold_9884_curated_6
RBG_16_Deltaproteobacteria_42_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(2876..3154)
DNA (279bp) protein (93aa)
Integration host factor, beta subunit, putative id=4309592 bin=GWC2_Deltaproteobacteria_42_51 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
ihfB; integration host factor subunit beta; K05788 integration host factor subunit beta
Tax=RBG_16_Deltaproteobacteria_42_7_curated
RBG_16_scaffold_9884_curated_7
RBG_16_Deltaproteobacteria_42_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(3337..4218)
DNA (882bp) protein (294aa)
signal peptide peptidase (EC:3.4.21.-); K04773 protease IV [EC:3.4.21.-]
Signal peptide peptidase A, Serine peptidase, MEROPS family S49 id=4309593 bin=GWC2_Deltaproteobacteria_42_51 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria rbh
Tax=RBG_16_Deltaproteobacteria_42_7_curated
RBG_16_scaffold_9884_curated_8
RBG_16_Deltaproteobacteria_42_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(4225..5880)
DNA (1656bp) protein (552aa)
30S ribosomal protein S1 id=4309594 bin=GWC2_Deltaproteobacteria_42_51 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria rbh
30S ribosomal protein S1; K02945 small subunit ribosomal protein S1 rbh
Tax=RBG_16_Deltaproteobacteria_42_7_curated
RBG_16_scaffold_9884_curated_9
RBG_16_Deltaproteobacteria_42_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6122..6358)
DNA (237bp) protein (79aa)
Iron-sulfur cluster-binding protein id=3761697 bin=GWC2_Deltaproteobacteria_42_51 species=Chthoniobacter flavus genus=Chthoniobacter taxon_order=unknown taxon_class=Spartobacteria phylum=Verrucomicrobia tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
hypothetical protein
Tax=RBG_16_Deltaproteobacteria_42_7_curated
RBG_16_scaffold_9884_curated_10
RBG_16_Deltaproteobacteria_42_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6355..6636)
DNA (282bp) protein (94aa)
Uncharacterized protein id=3761800 bin=GWC2_Deltaproteobacteria_42_51 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
MoaD family protein
Tax=RBG_16_Deltaproteobacteria_42_7_curated
RBG_16_scaffold_9884_curated_11
RBG_16_Deltaproteobacteria_42_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6735..6971)
DNA (237bp) protein (79aa)
SirA family protein; K04085 tRNA 2-thiouridine synthesizing protein A [EC:2.8.1.-]
SirA family protein id=3761801 bin=GWC2_Deltaproteobacteria_42_51 species=Thermincola potens genus=Thermincola taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
Tax=RBG_16_Deltaproteobacteria_42_7_curated
RBG_16_scaffold_9884_curated_12
RBG_16_Deltaproteobacteria_42_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6974..7930)
DNA (957bp) protein (319aa)
Nitrite and sulphite reductase 4Fe-4S subunit id=3761802 bin=GWC2_Deltaproteobacteria_42_51 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria rbh
nitrite and sulfite reductase 4Fe-4S region rbh
Tax=RBG_16_Deltaproteobacteria_42_7_curated
RBG_16_scaffold_9884_curated_13
RBG_16_Deltaproteobacteria_42_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8111..9346)
DNA (1236bp) protein (412aa)
thrC; threonine synthase (TS) (EC:4.2.3.1) rbh
Threonine synthase id=3761803 bin=GWC2_Deltaproteobacteria_42_51 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria rbh
Tax=RBG_16_Deltaproteobacteria_42_7_curated
Displaying 13 items

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