ggKbase home page

RBG_16_scaffold_56267_curated

Search features with annotation key words

Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RBG_16_scaffold_56267_curated_1
RBG_16_Deltaproteobacteria_42_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..1795
DNA (1794bp) protein (598aa)
hypothetical protein; K00974 tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-] rbh
CBS domain containing protein id=4734424 bin=GWC2_Deltaproteobacteria_55_46 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_55_46 organism_group=Deltaproteobacteria organism_desc=Clade sibling to the Geobacter/Pelobacter rbh
Tax=RBG_16_Deltaproteobacteria_42_7_curated
RBG_16_scaffold_56267_curated_2
RBG_16_Deltaproteobacteria_42_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1832..2488
DNA (657bp) protein (219aa)
Transport-associated protein id=2244616 bin=GWB2_Proteobacteria_55_19 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Proteobacteria_55_19 organism_group=Proteobacteria organism_desc=Good
transport-associated protein
Tax=RBG_16_Deltaproteobacteria_42_7_curated
RBG_16_scaffold_56267_curated_3
RBG_16_Deltaproteobacteria_42_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2519..2653)
DNA (135bp) protein (45aa)
Tax=RBG_16_Deltaproteobacteria_42_7_curated
RBG_16_scaffold_56267_curated_4
RBG_16_Deltaproteobacteria_42_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2897..3211)
DNA (315bp) protein (105aa)
NAD-dependent epimerase/dehydratase id=4834388 bin=GWC2_Deltaproteobacteria_42_51 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
NAD-dependent epimerase/dehydratase
Tax=RBG_16_Deltaproteobacteria_42_7_curated
RBG_16_scaffold_56267_curated_5
RBG_16_Deltaproteobacteria_42_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3235..3774)
DNA (540bp) protein (180aa)
NAD-dependent epimerase/dehydratase; K00329 NADH dehydrogenase [EC:1.6.5.3]; K00356 NADH dehydrogenase [EC:1.6.99.3]
NAD-dependent epimerase/dehydratase id=4834388 bin=GWC2_Deltaproteobacteria_42_51 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
Tax=RBG_16_Deltaproteobacteria_42_7_curated
RBG_16_scaffold_56267_curated_6
RBG_16_Deltaproteobacteria_42_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3771..4070)
DNA (300bp) protein (100aa)
Response regulator receiver protein id=4834387 bin=GWC2_Deltaproteobacteria_42_51 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
response regulator receiver protein
Tax=RBG_16_Deltaproteobacteria_42_7_curated
RBG_16_scaffold_56267_curated_7
RBG_16_Deltaproteobacteria_42_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5130..5258
DNA (129bp) protein (43aa)
Tax=RBG_16_Deltaproteobacteria_42_7_curated
RBG_16_scaffold_56267_curated_8
RBG_16_Deltaproteobacteria_42_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5576..5944)
DNA (369bp) protein (123aa)
Transcriptional regulator, TraR/DksA family id=4834384 bin=GWC2_Deltaproteobacteria_42_51 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
TraR/DksA family transcriptional regulator; K06204 DnaK suppressor protein
Tax=RBG_16_Deltaproteobacteria_42_7_curated
RBG_16_scaffold_56267_curated_9
RBG_16_Deltaproteobacteria_42_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6030..6527)
DNA (498bp) protein (166aa)
Molybdenum cofactor biosynthesis protein C id=4834383 bin=GWC2_Deltaproteobacteria_42_51 species=Heliobacterium modesticaldum genus=Heliobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
MoaC; molybdenum cofactor biosynthesis enzyme; K03637 molybdenum cofactor biosynthesis protein C
Tax=RBG_16_Deltaproteobacteria_42_7_curated
RBG_16_scaffold_56267_curated_10
RBG_16_Deltaproteobacteria_42_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6602..7936)
DNA (1335bp) protein (445aa)
Putative uncharacterized protein id=4834382 bin=GWC2_Deltaproteobacteria_42_51 species=uncultured Desulfobacterium sp. genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria rbh
hypothetical protein
Tax=RBG_16_Deltaproteobacteria_42_7_curated
RBG_16_scaffold_56267_curated_11
RBG_16_Deltaproteobacteria_42_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9100..10893)
DNA (1794bp) protein (598aa)
Chaperone protein DnaK id=4834353 bin=GWC2_Deltaproteobacteria_42_51 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria rbh
dnaK; molecular chaperone DnaK; K04043 molecular chaperone DnaK rbh
Tax=RBG_16_Deltaproteobacteria_42_7_curated
RBG_16_scaffold_56267_curated_12
RBG_16_Deltaproteobacteria_42_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10971..11165)
DNA (195bp) protein (65aa)
Protein GrpE id=4834352 bin=GWC2_Deltaproteobacteria_42_51 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
heat shock protein GrpE
Tax=RBG_16_Deltaproteobacteria_42_7_curated
Displaying 12 items

View Taxonomy