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RBG_16_scaffold_27225_curated

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RBG_16_scaffold_27225_curated_1
RBG_16_Deltaproteobacteria_42_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(1..135)
DNA (135bp) protein (45aa)
Tax=RBG_16_Deltaproteobacteria_42_7_curated
RBG_16_scaffold_27225_curated_2
RBG_16_Deltaproteobacteria_42_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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670..1083
DNA (414bp) protein (138aa)
Integral membrane sensor signal transduction histidine kinase id=1894397 bin=GWB2_Nitrospirae_rel_47_37 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
integral membrane sensor signal transduction histidine kinase
Tax=RBG_16_Deltaproteobacteria_42_7_curated
RBG_16_scaffold_27225_curated_3
RBG_16_Deltaproteobacteria_42_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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1129..2514
DNA (1386bp) protein (462aa)
Two component, sigma54 specific, transcriptional regulator, Fis family id=1894399 bin=GWB2_Nitrospirae_rel_47_37 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum) rbh
Fis family two component sigma54 specific transcriptional regulator rbh
Tax=RBG_16_Deltaproteobacteria_42_7_curated
RBG_16_scaffold_27225_curated_4
RBG_16_Deltaproteobacteria_42_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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3096..3830
DNA (735bp) protein (245aa)
Anaerobic dehydrogenase id=2268381 bin=GWB2_Nitrospirae_rel_47_37 species=unknown genus=unknown taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum) rbh
molybdopterin oxidoreductase; K08357 tetrathionate reductase subunit A
Tax=RBG_16_Deltaproteobacteria_42_7_curated
RBG_16_scaffold_27225_curated_5
RBG_16_Deltaproteobacteria_42_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3939..6086
DNA (2148bp) protein (716aa)
Anaerobic dehydrogenase, typically selenocysteine-containing id=2268382 bin=GWB2_Nitrospirae_rel_47_37 species=Desulfosporosinus youngiae genus=Desulfosporosinus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum) rbh
molybdopterin oxidoreductase; K08357 tetrathionate reductase subunit A rbh
Tax=RBG_16_Deltaproteobacteria_42_7_curated
RBG_16_scaffold_27225_curated_6
RBG_16_Deltaproteobacteria_42_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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6165..6782
DNA (618bp) protein (206aa)
Putative uncharacterized protein id=2586406 bin=GWC2_Methylomirabilis_70_16 species=Vibrio harveyi genus=Vibrio taxon_order=Vibrionales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10 rbh
hypothetical protein; K08358 tetrathionate reductase subunit B
Tax=RBG_16_Deltaproteobacteria_42_7_curated
RBG_16_scaffold_27225_curated_7
RBG_16_Deltaproteobacteria_42_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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6865..7236
DNA (372bp) protein (124aa)
4Fe-4S ferredoxin iron-sulfur binding domain protein id=2268385 bin=GWB2_Nitrospirae_rel_47_37 species=Denitrovibrio acetiphilus genus=Denitrovibrio taxon_order=Deferribacterales taxon_class=Deferribacteres phylum=Deferribacteres tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
4Fe-4S ferredoxin
Tax=RBG_16_Deltaproteobacteria_42_7_curated
RBG_16_scaffold_27225_curated_8
RBG_16_Deltaproteobacteria_42_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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7275..8165
DNA (891bp) protein (297aa)
4Fe-4S dicluster domain protein id=1835221 bin=GWB2_Geobacter-like_52_12 species=Selenomonas sp. CM52 genus=Selenomonas taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWB2_Geobacter-like_52_12 organism_group=Deltaproteobacteria organism_desc=Good
hypothetical protein
Tax=RBG_16_Deltaproteobacteria_42_7_curated
RBG_16_scaffold_27225_curated_9
RBG_16_Deltaproteobacteria_42_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8158..8658
DNA (501bp) protein (167aa)
cytoplasmic chaperone TorD family protein id=2268386 bin=GWB2_Nitrospirae_rel_47_37 species=Endoriftia persephone genus=Endoriftia taxon_order=unknown taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
cytoplasmic chaperone TorD family protein
Tax=RBG_16_Deltaproteobacteria_42_7_curated
RBG_16_scaffold_27225_curated_10
RBG_16_Deltaproteobacteria_42_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9004..9351
DNA (348bp) protein (116aa)
hypothetical protein id=2268387 bin=GWB2_Nitrospirae_rel_47_37 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
Tax=RBG_16_Deltaproteobacteria_42_7_curated
RBG_16_scaffold_27225_curated_11
RBG_16_Deltaproteobacteria_42_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9422..11179
DNA (1758bp) protein (586aa)
hypothetical protein id=2268388 bin=GWB2_Nitrospirae_rel_47_37 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum) rbh
Tax=RBG_16_Deltaproteobacteria_42_7_curated
RBG_16_scaffold_27225_curated_12
RBG_16_Deltaproteobacteria_42_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11248..12180
DNA (933bp) protein (311aa)
hypothetical protein id=2268390 bin=GWB2_Nitrospirae_rel_47_37 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum) rbh
Tax=RBG_16_Deltaproteobacteria_42_7_curated
RBG_16_scaffold_27225_curated_13
RBG_16_Deltaproteobacteria_42_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12263..13282)
DNA (1020bp) protein (340aa)
Sodium/calcium exchanger membrane region id=3240801 bin=GWF2_Nitrospirae_44_13 species=Roseiflexus castenholzii genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae rbh
sodium/calcium exchanger membrane region; K07301 inner membrane protein rbh
Tax=RBG_16_Deltaproteobacteria_42_7_curated
RBG_16_scaffold_27225_curated_14
RBG_16_Deltaproteobacteria_42_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13279..13443)
DNA (165bp) protein (55aa)
Tax=RBG_16_Deltaproteobacteria_42_7_curated
RBG_16_scaffold_27225_curated_15
RBG_16_Deltaproteobacteria_42_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13475..13741)
DNA (267bp) protein (89aa)
bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB (EC:2.4.1.15 3.1.3.12); K16055 trehalose 6-phosphate synthase/phosphatase [EC:2.4.1.15 3.1.3.12]
Alpha,alpha-trehalose-phosphate synthase [UDP-forming] / trehalose 6-phosphate phosphatase id=2311519 bin=GWB2_Nitrospirae_rel_47_37 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
Tax=RBG_16_Deltaproteobacteria_42_7_curated
Displaying 15 items

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