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RBG_13_OP3_44_8_RBG_13_scaffold_2189

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RBG_13_OP3_44_8_RBG_13_scaffold_2189_1
unknown

Not on your lists

comp(3..104)
DNA (102bp) protein (34aa)

This feature has no annotations

RBG_13_OP3_44_8_RBG_13_scaffold_2189_2
unknown

Not on your lists

comp(194..1072)
DNA (879bp) protein (293aa)
Trigger factor id=2180011 bin=GWB2_CP_45_9 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWB2_CP_45_9 organism_group=Unknown_CP organism_desc=Sibling to OP3 based on rpS3
trigger factor; K03545 trigger factor
RBG_13_OP3_44_8_RBG_13_scaffold_2189_3
unknown

Not on your lists

comp(1322..1696)
DNA (375bp) protein (125aa)
Putative lipopolysaccharide transport protein B: ATP-binding component of ABC superfamily id=2665524 bin=GWA2_OP3_53_43 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_OP3_53_43 organism_group=OP3 (Omnitrophica) organism_desc=Was designated as curated version. Not curated. rp block places as OP3
lptB; lipopolysaccharide transport protein B: ATP-binding component of ABC superfamily
RBG_13_OP3_44_8_RBG_13_scaffold_2189_4
unknown

Not on your lists

comp(2025..2936)
DNA (912bp) protein (304aa)
Secreted protein containing DUF1239 id=3681773 bin=GWF2_OP3_43_52 species=sediment metagenome genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
hypothetical protein; K09774 lipopolysaccharide export system protein LptA
RBG_13_OP3_44_8_RBG_13_scaffold_2189_5
unknown

Not on your lists

comp(2929..3462)
DNA (534bp) protein (178aa)
Phenylphosphate carboxylase, gamma subunit id=2180022 bin=GWB2_CP_45_9 species=unknown genus=unknown taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWB2_CP_45_9 organism_group=Unknown_CP organism_desc=Sibling to OP3 based on rpS3
ppcC; phenylphosphate carboxylase, gamma subunit
RBG_13_OP3_44_8_RBG_13_scaffold_2189_6
unknown

Not on your lists

comp(3475..4443)
DNA (969bp) protein (323aa)
KpsF/GutQ family protein (EC:5.3.1.13); K06041 arabinose-5-phosphate isomerase [EC:5.3.1.13]
Uncharacterized protein id=3681762 bin=GWF2_OP3_43_52 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
RBG_13_OP3_44_8_RBG_13_scaffold_2189_7
unknown

Not on your lists

comp(4440..4700)
DNA (261bp) protein (87aa)
2-dehydro-3-deoxyphosphooctonate aldolase (EC:2.5.1.55); K01627 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
2-dehydro-3-deoxyphosphooctonate aldolase id=4817839 bin=GWC2_OP3_44_8 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_OP3_44_8 organism_group=OP3 (Omnitrophica) organism_desc=Same as GWF2_43_52
RBG_13_OP3_44_8_RBG_13_scaffold_2189_8
unknown

Not on your lists

comp(5782..6807)
DNA (1026bp) protein (342aa)
D-beta-D-heptose 7-phosphate kinase, domain I of bifunctional protein HldE id=3681754 bin=GWF2_OP3_43_52 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
rfaE bifunctional protein
RBG_13_OP3_44_8_RBG_13_scaffold_2189_9
unknown

Not on your lists

comp(6804..7733)
DNA (930bp) protein (310aa)
Uncharacterized protein id=3681752 bin=GWF2_OP3_43_52 species=ACD63 genus=ACD63 taxon_order=ACD63 taxon_class=ACD63 phylum=OD1 tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
hypothetical protein
RBG_13_OP3_44_8_RBG_13_scaffold_2189_10
unknown

Not on your lists

comp(7820..9883)
DNA (2064bp) protein (688aa)
ADP-heptose--LPS heptosyltransferase II; K02843 heptosyltransferase II [EC:2.4.-.-]
ADP-heptose--lipopolysaccharide heptosyltransferase id=3681747 bin=GWF2_OP3_43_52 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
RBG_13_OP3_44_8_RBG_13_scaffold_2189_11
unknown

Not on your lists

comp(9891..10937)
DNA (1047bp) protein (349aa)
lipopolysaccharide heptosyltransferase III; K02849 heptosyltransferase III [EC:2.4.-.-]
ADP-heptose--lipopolysaccharide heptosyltransferase id=3681745 bin=GWF2_OP3_43_52 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
RBG_13_OP3_44_8_RBG_13_scaffold_2189_12
unknown

Not on your lists

comp(10934..11725)
DNA (792bp) protein (264aa)
Polysaccharide deacetylase id=3681741 bin=GWF2_OP3_43_52 species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
polysaccharide deacetylase
RBG_13_OP3_44_8_RBG_13_scaffold_2189_13
unknown

Not on your lists

comp(11719..12807)
DNA (1089bp) protein (363aa)
Glycosyl transferase, group 1 id=4652273 bin=GWC2_OP3_44_8 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_OP3_44_8 organism_group=OP3 (Omnitrophica) organism_desc=Same as GWF2_43_52
Glycosyl transferase group 1
RBG_13_OP3_44_8_RBG_13_scaffold_2189_14
unknown

Not on your lists

comp(12825..14924)
DNA (2100bp) protein (700aa)
Glycosyl transferase id=4652272 bin=GWC2_OP3_44_8 species=Acetobacter tropicalis genus=Acetobacter taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_OP3_44_8 organism_group=OP3 (Omnitrophica) organism_desc=Same as GWF2_43_52
putative glycosyltransferase
RBG_13_OP3_44_8_RBG_13_scaffold_2189_15
unknown

Not on your lists

comp(14921..16873)
DNA (1953bp) protein (651aa)
lipid A biosynthesis acyltransferase; K02517 lipid A biosynthesis lauroyl acyltransferase [EC:2.3.1.-]
Lipid A biosynthesis acyltransferase id=4188502 bin=GWF2_OP3_38_59 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_OP3_38_59 organism_group=OP3 (Omnitrophica) organism_desc=a159
RBG_13_OP3_44_8_RBG_13_scaffold_2189_16
unknown

Not on your lists

comp(16827..17897)
DNA (1071bp) protein (357aa)
lpxK; Tetraacyldisaccharide-1-P 4'-kinase; K00912 tetraacyldisaccharide 4'-kinase [EC:2.7.1.130]
Tetraacyldisaccharide 4'-kinase id=3681732 bin=GWF2_OP3_43_52 species=Chthoniobacter flavus genus=Chthoniobacter taxon_order=unknown taxon_class=Spartobacteria phylum=Verrucomicrobia tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
RBG_13_OP3_44_8_RBG_13_scaffold_2189_17
unknown

Not on your lists

comp(17898..18317)
DNA (420bp) protein (140aa)
Uncharacterized protein id=2755331 bin=GWF2_Ignavibacteria_35_20 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWF2_Ignavibacteria_35_20 organism_group=Ignavibacteria
hypothetical protein
RBG_13_OP3_44_8_RBG_13_scaffold_2189_18
unknown

Not on your lists

comp(18929..19132)
DNA (204bp) protein (68aa)

This feature has no annotations

Displaying 18 items

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