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RBG_13_OP3_44_8_RBG_13_scaffold_6161

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RBG_13_OP3_44_8_RBG_13_scaffold_6161_1
unknown

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comp(2..151)
DNA (150bp) protein (50aa)
Electron transport complex, RnfABCDGE type, B subunit id=3707668 bin=GWC2_OP3_44_8 species=Thermosediminibacter oceani genus=Thermosediminibacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_OP3_44_8 organism_group=OP3 (Omnitrophica) organism_desc=Same as GWF2_43_52
RnfABCDGE type electron transport complex subunit B
RBG_13_OP3_44_8_RBG_13_scaffold_6161_2
unknown

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400..639
DNA (240bp) protein (80aa)

This feature has no annotations

RBG_13_OP3_44_8_RBG_13_scaffold_6161_3
unknown

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comp(818..1411)
DNA (594bp) protein (198aa)
RnfE id=2850085 bin=GWF2_OP3_43_52 species=Acetobacterium woodii genus=Acetobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
RnfABCDGE type electron transport complex subunit E; K03613 electron transport complex protein RnfE
RBG_13_OP3_44_8_RBG_13_scaffold_6161_4
unknown

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comp(1408..2349)
DNA (942bp) protein (314aa)
Electron transport complex, RnfABCDGE type, D subunit id=2850091 bin=GWF2_OP3_43_52 species=Thermoanaerobacterium thermosaccharolyticum genus=Thermoanaerobacterium taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
electron transport complex, RnfABCDGE type, D subunit
RBG_13_OP3_44_8_RBG_13_scaffold_6161_5
unknown

Not on your lists

comp(2339..2863)
DNA (525bp) protein (175aa)
Electron transport complex, RnfABCDGE type, G subunit id=3707664 bin=GWC2_OP3_44_8 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_OP3_44_8 organism_group=OP3 (Omnitrophica) organism_desc=Same as GWF2_43_52
RnfABCDGE type electron transport complex subunit G; K03612 electron transport complex protein RnfG
RBG_13_OP3_44_8_RBG_13_scaffold_6161_6
unknown

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comp(2860..4155)
DNA (1296bp) protein (432aa)
Electron transport complex protein RnfC id=2850103 bin=GWF2_OP3_43_52 species=Clostridium beijerinckii genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
RnfABCDGE type electron transport complex subunit C; K03615 electron transport complex protein RnfC
RBG_13_OP3_44_8_RBG_13_scaffold_6161_7
unknown

Not on your lists

comp(4143..5501)
DNA (1359bp) protein (453aa)
Major facilitator superfamily MFS_1 id=2850109 bin=GWF2_OP3_43_52 species=unknown genus=Aciduliprofundum taxon_order=unknown taxon_class=unknown phylum=Euryarchaeota tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
arabinose efflux permease family protein
RBG_13_OP3_44_8_RBG_13_scaffold_6161_8

Not on your lists

5896..6096
DNA (201bp) protein (67aa)
Marine sediment metagenome DNA, contig: S01H1_S23299 {ECO:0000313|EMBL:GAG18417.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Cold shock protein CspA id=4185583 bin=GWF2_OP3_43_52 species=uncultured bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
cold-shock DNA-binding domain-containing protein; K03704 cold shock protein (beta-ribbon, CspA family)
RBG_13_OP3_44_8_RBG_13_scaffold_6161_9
unknown

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comp(6568..7002)
DNA (435bp) protein (145aa)
membrane protein n=1 Tax=Candidatus Omnitrophus fodinae SCGC AAA011-A17 RepID=UPI0003B62E08
signal transduction protein with CBS domains; K04767 acetoin utilization protein AcuB
RBG_13_OP3_44_8_RBG_13_scaffold_6161_10
unknown

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comp(7298..7399)
DNA (102bp) protein (34aa)

This feature has no annotations

RBG_13_OP3_44_8_RBG_13_scaffold_6161_11
unknown

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7644..9464
DNA (1821bp) protein (607aa)
histidine kinase
multi-sensor signal transduction histidine kinase id=4474254 bin=GWC2_OP3-like_45_7 species=Pseudoalteromonas rubra genus=Pseudoalteromonas taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_OP3-like_45_7 organism_group=OP3 (Omnitrophica)
Displaying 11 items

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