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RBG_13_OP3_44_8_RBG_13_scaffold_2575

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RBG_13_OP3_44_8_RBG_13_scaffold_2575_1
unknown

Not on your lists

comp(1..945)
DNA (945bp) protein (315aa)
pyruvate kinase (EC:2.7.9.2 2.7.1.40); K00873 pyruvate kinase [EC:2.7.1.40]
Pyruvate kinase id=2010380 bin=GWB2_CP_45_9 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB2_CP_45_9 organism_group=Unknown_CP organism_desc=Sibling to OP3 based on rpS3
RBG_13_OP3_44_8_RBG_13_scaffold_2575_2
unknown

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comp(938..1627)
DNA (690bp) protein (230aa)
pcnB; polynucleotide adenylyltransferase/metal dependent phosphohydrolase (EC:2.7.7.19)
Polynucleotide adenylyltransferase/metal dependent phosphohydrolase id=2849830 bin=GWF2_OP3_43_52 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
RBG_13_OP3_44_8_RBG_13_scaffold_2575_3
unknown

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2091..2537
DNA (447bp) protein (149aa)

This feature has no annotations

RBG_13_OP3_44_8_RBG_13_scaffold_2575_4
unknown

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comp(2485..2955)
DNA (471bp) protein (157aa)
Transcriptional repressor NrdR id=2849835 bin=GWF2_OP3_43_52 species=unknown genus=Thermoanaerobacterium taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
nrdR; transcriptional regulator NrdR; K07738 transcriptional repressor NrdR
RBG_13_OP3_44_8_RBG_13_scaffold_2575_5

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comp(2952..3416)
DNA (465bp) protein (155aa)
CMP/dCMP deaminase zinc-binding protein; K01493 dCMP deaminase [EC:3.5.4.12]
dCMP deaminase / Late competence protein ComEB n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1AX23_9CLOT
Marine sediment metagenome DNA, contig: S03H2_L00935 {ECO:0000313|EMBL:GAH44049.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
RBG_13_OP3_44_8_RBG_13_scaffold_2575_6
unknown

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comp(3417..4664)
DNA (1248bp) protein (416aa)
glyA; glycine hydroxymethyltransferase (EC:2.1.2.1); K00600 glycine hydroxymethyltransferase [EC:2.1.2.1]
Serine hydroxymethyltransferase id=2849842 bin=GWF2_OP3_43_52 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
RBG_13_OP3_44_8_RBG_13_scaffold_2575_7
unknown

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comp(4661..5122)
DNA (462bp) protein (154aa)
ribose 5-phosphate isomerase B (EC:5.3.1.26); K01808 ribose 5-phosphate isomerase B [EC:5.3.1.6]
Ribose-5-phosphate isomerase B id=2849849 bin=GWF2_OP3_43_52 species=ACD79 genus=ACD79 taxon_order=ACD79 taxon_class=ACD79 phylum=Clamydiae tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
RBG_13_OP3_44_8_RBG_13_scaffold_2575_8
unknown

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comp(5119..6183)
DNA (1065bp) protein (355aa)
Sua5/YciO/YrdC/YwlC family protein id=2849852 bin=GWF2_OP3_43_52 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
hypothetical protein
RBG_13_OP3_44_8_RBG_13_scaffold_2575_9
unknown

Not on your lists

comp(6180..6665)
DNA (486bp) protein (162aa)
phosphoribosylamine--glycine ligase (EC:4.1.1.21 6.3.4.13); K01945 phosphoribosylamine--glycine ligase [EC:6.3.4.13]
N5-carboxyaminoimidazole ribonucleotide mutase id=2849856 bin=GWF2_OP3_43_52 species=Desulfurispirillum indicum genus=Desulfurispirillum taxon_order=Chrysiogenales taxon_class=Chrysiogenetes phylum=Chrysiogenetes tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
RBG_13_OP3_44_8_RBG_13_scaffold_2575_10

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comp(6678..7472)
DNA (795bp) protein (265aa)
phosphoribosylamine/glycine ligase (EC:6.3.4.13); K01945 phosphoribosylamine--glycine ligase [EC:6.3.4.13]
Phosphoribosylamine--glycine ligase n=1 Tax=Thermincola potens (strain JR) RepID=D5XD50_THEPJ
Marine sediment metagenome DNA, contig: S01H4_S04044 {ECO:0000313|EMBL:GAG82818.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
RBG_13_OP3_44_8_RBG_13_scaffold_2575_11

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comp(7976..8179)
DNA (204bp) protein (68aa)
Marine sediment metagenome DNA, contig: S01H1_S13928 {ECO:0000313|EMBL:GAG11515.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein id=97655 bin=ACD64 species=ACD64 genus=ACD64 taxon_order=ACD64 taxon_class=ACD64 phylum=TM6 tax=ACD64 organism_group=TM6 organism_desc=unknown
RBG_13_OP3_44_8_RBG_13_scaffold_2575_12
unknown

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comp(8877..9752)
DNA (876bp) protein (292aa)
Band 7 protein id=4832885 bin=GWC2_OP3_44_8 species=Acetobacterium woodii genus=Acetobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_OP3_44_8 organism_group=OP3 (Omnitrophica) organism_desc=Same as GWF2_43_52
hypothetical protein
RBG_13_OP3_44_8_RBG_13_scaffold_2575_13
unknown

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comp(10920..11588)
DNA (669bp) protein (223aa)

This feature has no annotations

RBG_13_OP3_44_8_RBG_13_scaffold_2575_14
unknown

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comp(11589..13001)
DNA (1413bp) protein (471aa)
amidophosphoribosyltransferase (EC:2.4.2.14); K00764 amidophosphoribosyltransferase [EC:2.4.2.14]
Amidophosphoribosyltransferase id=4114650 bin=GWF2_OP3_38_59 species=Thermoplasmatales archaeon SCGC AB-539-N05 genus=unknown taxon_order=Thermoplasmatales taxon_class=Thermoplasmata phylum=Euryarchaeota tax=GWF2_OP3_38_59 organism_group=OP3 (Omnitrophica) organism_desc=a159
RBG_13_OP3_44_8_RBG_13_scaffold_2575_15
unknown

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comp(13028..13681)
DNA (654bp) protein (218aa)
Predicted rossmann fold nucleotide-binding protein id=2849885 bin=GWF2_OP3_43_52 species=uncultured Sphingobacteriales bacterium HF0130_33B19 genus=unknown taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
hypothetical protein; K06966
RBG_13_OP3_44_8_RBG_13_scaffold_2575_16
unknown

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13768..14022
DNA (255bp) protein (85aa)

This feature has no annotations

RBG_13_OP3_44_8_RBG_13_scaffold_2575_17
unknown

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14665..14784
DNA (120bp) protein (40aa)

This feature has no annotations

RBG_13_OP3_44_8_RBG_13_scaffold_2575_18
unknown

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15112..15444
DNA (333bp) protein (111aa)

This feature has no annotations

RBG_13_OP3_44_8_RBG_13_scaffold_2575_19
unknown

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comp(16036..17328)
DNA (1293bp) protein (431aa)
adenylosuccinate lyase (EC:4.3.2.2); K01756 adenylosuccinate lyase [EC:4.3.2.2]
Adenylosuccinate lyase id=4832875 bin=GWC2_OP3_44_8 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_OP3_44_8 organism_group=OP3 (Omnitrophica) organism_desc=Same as GWF2_43_52
RBG_13_OP3_44_8_RBG_13_scaffold_2575_20
Acetonema longum, Acetonema, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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comp(17454..18044)
DNA (591bp) protein (197aa)
Metal dependent phosphohydrolase n=1 Tax=Acetonema longum DSM 6540 RepID=F7NI35_9FIRM
Metal dependent phosphohydrolase {ECO:0000313|EMBL:EGO64267.1}; TaxID=1009370 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Acetonema.;" source="Acetonema longum DSM 6540.;"
metal dependent phosphohydrolase
RBG_13_OP3_44_8_RBG_13_scaffold_2575_21
unknown

Not on your lists

18493..18903
DNA (411bp) protein (137aa)

This feature has no annotations

RBG_13_OP3_44_8_RBG_13_scaffold_2575_22
Thermincola potens, Thermincola, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19208..20638)
DNA (1431bp) protein (477aa)
Metal dependent phosphohydrolase n=1 Tax=Thermincola potens (strain JR) RepID=D5X8K8_THEPJ
metal dependent phosphohydrolase
Metal dependent phosphohydrolase {ECO:0000313|EMBL:ADG82884.1}; TaxID=635013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Thermincola.;" source="Thermincola potens (strain JR).;"
RBG_13_OP3_44_8_RBG_13_scaffold_2575_23
unknown

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comp(20706..21509)
DNA (804bp) protein (268aa)
AAA ATPase id=4185551 bin=GWC2_OP3_44_8 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_OP3_44_8 organism_group=OP3 (Omnitrophica) organism_desc=Same as GWF2_43_52
ATPase AAA
RBG_13_OP3_44_8_RBG_13_scaffold_2575_24

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comp(21578..22192)
DNA (615bp) protein (205aa)
hypothetical protein n=1 Tax=unclassified Aminicenantes RepID=UPI000376F609
Marine sediment metagenome DNA, contig: S01H4_L01295 {ECO:0000313|EMBL:GAG53793.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
sugar transferase
RBG_13_OP3_44_8_RBG_13_scaffold_2575_25
unknown

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comp(22149..23399)
DNA (1251bp) protein (417aa)
group 1 glycosyl transferase id=12556203 bin=CNBR_ACIDO species=Planctomyces brasiliensis genus=Planctomyces taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
glycosyltransferase
RBG_13_OP3_44_8_RBG_13_scaffold_2575_26
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(23403..23663)
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Bacillus cereus VD196 RepID=R8GN33_BACCE
Uncharacterized protein {ECO:0000313|EMBL:ETW98155.1}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
galE; UDP-glucose 4-epimerase
RBG_13_OP3_44_8_RBG_13_scaffold_2575_27

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comp(24028..24228)
DNA (201bp) protein (67aa)
NAD-dependent epimerase/dehydratase n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IMG5_NITGG
Marine sediment metagenome DNA, contig: S01H1_S09411 {ECO:0000313|EMBL:GAG04922.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
NAD-dependent epimerase/dehydratase
RBG_13_OP3_44_8_RBG_13_scaffold_2575_28
unknown

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comp(24230..25600)
DNA (1371bp) protein (457aa)
carbamoyltransferase n=1 Tax=Candidatus Omnitrophus fodinae SCGC AAA011-A17 RepID=UPI0003B3E210
putative carbamoyl transferase, NodU family
Displaying 28 items

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