ggKbase home page

RBG_13_OP3_44_8_RBG_13_scaffold_6838

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RBG_13_OP3_44_8_RBG_13_scaffold_6838_1
unknown

Not on your lists


41..328
DNA (288bp) protein (96aa)
30S ribosomal protein S19 id=2173680 bin=GWB2_CP_45_9 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWB2_CP_45_9 organism_group=Unknown_CP organism_desc=Sibling to OP3 based on rpS3
30S ribosomal protein S19; K02965 small subunit ribosomal protein S19
RBG_13_OP3_44_8_RBG_13_scaffold_6838_2
unknown

Not on your lists


333..671
DNA (339bp) protein (113aa)
50S ribosomal protein L22 id=4218988 bin=GWF2_OP3_43_52 species=Deferribacter desulfuricans genus=Deferribacter taxon_order=Deferribacterales taxon_class=Deferribacteres phylum=Deferribacteres tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
rplV; 50S ribosomal protein L22; K02890 large subunit ribosomal protein L22
RBG_13_OP3_44_8_RBG_13_scaffold_6838_3
unknown

Not on your lists


676..1365
DNA (690bp) protein (230aa)
30S ribosomal protein S3 id=2173676 bin=GWB2_CP_45_9 species=Methylococcus capsulatus genus=Methylococcus taxon_order=Methylococcales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWB2_CP_45_9 organism_group=Unknown_CP organism_desc=Sibling to OP3 based on rpS3
30S ribosomal protein S3; K02982 small subunit ribosomal protein S3
RBG_13_OP3_44_8_RBG_13_scaffold_6838_4
Clostridium tetani, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1544..1765)
DNA (222bp) protein (74aa)
Ribosomal protein n=1 Tax=Clostridium tetani (strain Massachusetts / E88) RepID=Q890P4_CLOTE
ribosomal protein
Ribosomal protein {ECO:0000313|EMBL:AAO37051.1}; TaxID=212717 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium tetani (strain Massachusetts / E88).;"
RBG_13_OP3_44_8_RBG_13_scaffold_6838_5
unknown

Not on your lists


1840..1986
DNA (147bp) protein (49aa)
50S ribosomal protein L29 id=2173670 bin=GWB2_CP_45_9 species=Carnobacterium maltaromaticum genus=Carnobacterium taxon_order=Lactobacillales taxon_class=Bacilli phylum=Firmicutes tax=GWB2_CP_45_9 organism_group=Unknown_CP organism_desc=Sibling to OP3 based on rpS3
RBG_13_OP3_44_8_RBG_13_scaffold_6838_6
unknown

Not on your lists


1988..2278
DNA (291bp) protein (97aa)
30S ribosomal protein S17 n=1 Tax=unclassified candidate division EM 19 RepID=UPI00036F7268
30S ribosomal protein S17; K02961 small subunit ribosomal protein S17
RBG_13_OP3_44_8_RBG_13_scaffold_6838_7
unknown

Not on your lists


2275..2643
DNA (369bp) protein (123aa)
50S ribosomal protein L14 id=4219000 bin=GWF2_OP3_43_52 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
rplN; 50S ribosomal protein L14; K02874 large subunit ribosomal protein L14
RBG_13_OP3_44_8_RBG_13_scaffold_6838_8
unknown

Not on your lists


2643..2954
DNA (312bp) protein (104aa)
50S ribosomal protein L24 id=3868634 bin=GWC2_OP3_44_8 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_OP3_44_8 organism_group=OP3 (Omnitrophica) organism_desc=Same as GWF2_43_52
50S ribosomal protein L24; K02895 large subunit ribosomal protein L24
RBG_13_OP3_44_8_RBG_13_scaffold_6838_9
unknown

Not on your lists


4001..4546
DNA (546bp) protein (182aa)
50S ribosomal protein L6 id=4263005 bin=GWC2_OP3_44_8 species=Commensalibacter intestini genus=Commensalibacter taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_OP3_44_8 organism_group=OP3 (Omnitrophica) organism_desc=Same as GWF2_43_52
rplF; 50S ribosomal protein L6; K02933 large subunit ribosomal protein L6
RBG_13_OP3_44_8_RBG_13_scaffold_6838_10
unknown

Not on your lists


4548..4913
DNA (366bp) protein (122aa)
50S ribosomal protein L18 id=4263003 bin=GWC2_OP3_44_8 species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_OP3_44_8 organism_group=OP3 (Omnitrophica) organism_desc=Same as GWF2_43_52
50S ribosomal protein L18
RBG_13_OP3_44_8_RBG_13_scaffold_6838_11
unknown

Not on your lists


4914..5390
DNA (477bp) protein (159aa)
30S ribosomal protein S5 id=4219013 bin=GWF2_OP3_43_52 species=Oscillibacter valericigenes genus=Oscillibacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
rpsE; 30S ribosomal protein S5; K02988 small subunit ribosomal protein S5
RBG_13_OP3_44_8_RBG_13_scaffold_6838_12
unknown

Not on your lists


5387..5962
DNA (576bp) protein (192aa)
50S ribosomal protein L15 id=2002108 bin=GWB2_CP_45_9 species=delta proteobacterium NaphS2 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_CP_45_9 organism_group=Unknown_CP organism_desc=Sibling to OP3 based on rpS3
50S ribosomal protein L15; K02876 large subunit ribosomal protein L15
RBG_13_OP3_44_8_RBG_13_scaffold_6838_13
unknown

Not on your lists


5943..7286
DNA (1344bp) protein (448aa)
Protein translocase subunit SecY id=2002106 bin=GWB2_CP_45_9 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWB2_CP_45_9 organism_group=Unknown_CP organism_desc=Sibling to OP3 based on rpS3
secY; preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY
RBG_13_OP3_44_8_RBG_13_scaffold_6838_14
Methanocella paludicola, Methanocella, Methanocellales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

7286..7945
DNA (660bp) protein (220aa)
adk; adenylate kinase; K00939 adenylate kinase [EC:2.7.4.3]
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331};; ATP-AMP transphosphorylase {ECO:0000256|HAMAP-Rule:MF_00235}; ATP:AMP phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00235}; Adenylate monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00235}; TaxID=304371 species="Archaea; Euryarchaeota; Methanomicrobia; Methanocellales; Methanocellaceae; Methanocella.;" so
Adenylate kinase n=1 Tax=Methanocella paludicola (strain DSM 17711 / JCM 13418 / NBRC 101707 / SANAE) RepID=D1Z0U5_METPS
RBG_13_OP3_44_8_RBG_13_scaffold_6838_15
unknown

Not on your lists

8253..8672
DNA (420bp) protein (140aa)
map; methionine aminopeptidase; K01265 methionyl aminopeptidase [EC:3.4.11.18]
Methionine aminopeptidase id=3685954 bin=GWF2_OP3_38_59 species=Acetonema longum genus=Acetonema taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWF2_OP3_38_59 organism_group=OP3 (Omnitrophica) organism_desc=a159
RBG_13_OP3_44_8_RBG_13_scaffold_6838_16
Veillonella sp. oral taxon 780, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

8674..8895
DNA (222bp) protein (74aa)
Translation initiation factor IF-1 n=1 Tax=Veillonella sp. oral taxon 780 str. F0422 RepID=F9N6G3_9FIRM
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075}; TaxID=944564 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella sp. oral taxon 780 str. F0422.;"
translation initiation factor IF-1; K02518 translation initiation factor IF-1
RBG_13_OP3_44_8_RBG_13_scaffold_6838_17
unknown

Not on your lists


9027..9455
DNA (429bp) protein (143aa)
SSU ribosomal protein S13P id=2002098 bin=GWB2_CP_45_9 species=Clostridium ultunense genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB2_CP_45_9 organism_group=Unknown_CP organism_desc=Sibling to OP3 based on rpS3
rpsM; 30S ribosomal protein S13; K02952 small subunit ribosomal protein S13
RBG_13_OP3_44_8_RBG_13_scaffold_6838_18
unknown

Not on your lists


9462..9851
DNA (390bp) protein (130aa)
Ribosomal protein S11 id=2002096 bin=GWB2_CP_45_9 species=Halothermothrix orenii genus=Halothermothrix taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=GWB2_CP_45_9 organism_group=Unknown_CP organism_desc=Sibling to OP3 based on rpS3
30S ribosomal protein S11; K02948 small subunit ribosomal protein S11
RBG_13_OP3_44_8_RBG_13_scaffold_6838_19
unknown

Not on your lists


9855..10484
DNA (630bp) protein (210aa)
30S ribosomal protein S4 id=4219029 bin=GWF2_OP3_43_52 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
30S ribosomal protein S4; K02986 small subunit ribosomal protein S4
RBG_13_OP3_44_8_RBG_13_scaffold_6838_20
unknown

Not on your lists

10662..11654
DNA (993bp) protein (331aa)
rpoA; DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6); K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
DNA-directed RNA polymerase subunit alpha id=2002093 bin=GWB2_CP_45_9 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWB2_CP_45_9 organism_group=Unknown_CP organism_desc=Sibling to OP3 based on rpS3
RBG_13_OP3_44_8_RBG_13_scaffold_6838_21
unknown

Not on your lists


11658..12224
DNA (567bp) protein (189aa)
50S ribosomal protein L17 id=4219062 bin=GWF2_OP3_43_52 species=Desulfovibrio desulfuricans genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
50S ribosomal protein L17; K02879 large subunit ribosomal protein L17
RBG_13_OP3_44_8_RBG_13_scaffold_6838_22
unknown

Not on your lists

12242..13168
DNA (927bp) protein (309aa)
aspartate aminotransferase (EC:2.6.1.1); K00812 aspartate aminotransferase [EC:2.6.1.1]
PLP-dependent aminotransferases id=2002091 bin=GWB2_CP_45_9 species=Caldanaerobacter subterraneus genus=Caldanaerobacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWB2_CP_45_9 organism_group=Unknown_CP organism_desc=Sibling to OP3 based on rpS3
Displaying 22 items

View Taxonomy