ggKbase home page

RIFCSPHIGHO2_01_FULL_OD1_55_79_rifcsphigho2_01_scaffold_28082

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPHIGHO2_01_FULL_OD1_55_79_rifcsphigho2_01_scaffold_28082_1
R_OD1_Kaiserbacteria_55_25, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

1..318
DNA (318bp) protein (106aa)
Tax=RIFCSPLOWO2_01_FULL_OD1_Kaiserbacteria_55_25_curated
RIFCSPHIGHO2_01_FULL_OD1_55_79_rifcsphigho2_01_scaffold_28082_2
R_OD1_Kaiserbacteria_55_25, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

comp(408..1079)
DNA (672bp) protein (224aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI000361D698
hypothetical protein; K07491 putative transposase Tax=RIFCSPLOWO2_01_FULL_OD1_Kaiserbacteria_55_25_curated
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_55_79_rifcsphigho2_01_scaffold_28082_3
R_OD1_Kaiserbacteria_55_25, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

comp(1148..1513)
DNA (366bp) protein (122aa)
Tax=RIFCSPLOWO2_01_FULL_OD1_Kaiserbacteria_55_25_curated
RIFCSPHIGHO2_01_FULL_OD1_55_79_rifcsphigho2_01_scaffold_28082_4
R_OD1_Kaiserbacteria_55_25, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

comp(1528..2148)
DNA (621bp) protein (207aa)
Zn-dependent hydrolase of the beta-lactamase fold-like protein Tax=RIFCSPLOWO2_01_FULL_OD1_Kaiserbacteria_55_25_curated
id=5803530 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
Zn-dependent hydrolase of the beta-lactamase fold-like protein
RIFCSPHIGHO2_01_FULL_OD1_55_79_rifcsphigho2_01_scaffold_28082_5
R_OD1_Kaiserbacteria_55_25, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

2284..2607
DNA (324bp) protein (108aa)
Tax=RIFCSPLOWO2_01_FULL_OD1_Kaiserbacteria_55_25_curated
RIFCSPHIGHO2_01_FULL_OD1_55_79_rifcsphigho2_01_scaffold_28082_6
R_OD1_Kaiserbacteria_55_25, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

comp(2650..3126)
DNA (477bp) protein (159aa)
Large-conductance mechanosensitive channel n=1 Tax=Yersinia ruckeri ATCC 29473 RepID=C4UHC8_YERRU
mscL; large-conductance mechanosensitive channel; K03282 large conductance mechanosensitive channel Tax=RIFCSPLOWO2_01_FULL_OD1_Kaiserbacteria_55_25_curated
mscL; large conductance mechanosensitive channel protein
RIFCSPHIGHO2_01_FULL_OD1_55_79_rifcsphigho2_01_scaffold_28082_7
R_OD1_Kaiserbacteria_55_25, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

3366..4499
DNA (1134bp) protein (378aa)
rpfA; 30S ribosomal protein S1 Tax=RIFCSPLOWO2_01_FULL_OD1_Kaiserbacteria_55_25_curated
RNA binding S1 domain-containing protein; K02945 small subunit ribosomal protein S1 id=5803531 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
rpfA; 30S ribosomal protein S1
RIFCSPHIGHO2_01_FULL_OD1_55_79_rifcsphigho2_01_scaffold_28082_8
R_OD1_Kaiserbacteria_55_25, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

comp(4517..4882)
DNA (366bp) protein (122aa)
hypothetical protein Tax=RIFCSPLOWO2_01_FULL_OD1_Kaiserbacteria_55_25_curated
s23 ribosomal protein id=16396 bin=ACD1 species=ACD1 genus=ACD1 taxon_order=ACD1 taxon_class=ACD1 phylum=OD1-i tax=ACD1 organism_group=OD1-i organism_desc=OD1-i
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_55_79_rifcsphigho2_01_scaffold_28082_9
R_OD1_Kaiserbacteria_55_25, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

comp(4912..5505)
DNA (594bp) protein (198aa)
peptidyl-tRNA hydrolase (EC:3.1.1.29); K01056 peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] Tax=RIFCSPLOWO2_01_FULL_OD1_Kaiserbacteria_55_25_curated
Aminoacyl-tRNA hydrolase (EC:3.1.1.29); K01056 peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] id=5803533 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
peptidyl-tRNA hydrolase (EC:3.1.1.29)
RIFCSPHIGHO2_01_FULL_OD1_55_79_rifcsphigho2_01_scaffold_28082_10
R_OD1_Kaiserbacteria_55_25, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

5692..6282
DNA (591bp) protein (197aa)
signal peptidase I (EC:3.4.21.89); K03100 signal peptidase I [EC:3.4.21.89] Tax=RIFCSPLOWO2_01_FULL_OD1_Kaiserbacteria_55_25_curated
signal peptidase I (EC:3.4.21.89); K03100 signal peptidase I [EC:3.4.21.89] id=5803493 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
signal peptidase I (EC:3.4.21.89)
RIFCSPHIGHO2_01_FULL_OD1_55_79_rifcsphigho2_01_scaffold_28082_11
R_OD1_Kaiserbacteria_55_25, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists


6393..7595
DNA (1203bp) protein (401aa)
hisS; histidyl-tRNA synthetase (EC:6.1.1.21); K01892 histidyl-tRNA synthetase [EC:6.1.1.21] Tax=RIFCSPLOWO2_01_FULL_OD1_Kaiserbacteria_55_25_curated
Histidyl-tRNA synthetase n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PYX5_9BACT
histidyl-tRNA synthetase
RIFCSPHIGHO2_01_FULL_OD1_55_79_rifcsphigho2_01_scaffold_28082_12
R_OD1_Kaiserbacteria_55_25, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

8195..9394
DNA (1200bp) protein (400aa)
Tax=RIFCSPLOWO2_01_FULL_OD1_Kaiserbacteria_55_25_curated
RIFCSPHIGHO2_01_FULL_OD1_55_79_rifcsphigho2_01_scaffold_28082_13
R_OD1_Kaiserbacteria_55_25, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

10034..10438
DNA (405bp) protein (135aa)
seg Tax=RIFCSPLOWO2_01_FULL_OD1_Kaiserbacteria_55_25_curated
seg id=5803491 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
RIFCSPHIGHO2_01_FULL_OD1_55_79_rifcsphigho2_01_scaffold_28082_14
R_OD1_Kaiserbacteria_55_25, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

10441..10830
DNA (390bp) protein (130aa)
hypothetical protein; K07042 probable rRNA maturation factor Tax=RIFCSPLOWO2_01_FULL_OD1_Kaiserbacteria_55_25_curated
hypothetical protein; K07042 probable rRNA maturation factor id=5803490 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_55_79_rifcsphigho2_01_scaffold_28082_15
R_OD1_Kaiserbacteria_55_25, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

10884..12050
DNA (1167bp) protein (389aa)
cell division protein FtsA; K03590 cell division protein FtsA Tax=RIFCSPLOWO2_01_FULL_OD1_Kaiserbacteria_55_25_curated
cell division protein FtsA; K03590 cell division protein FtsA id=5803489 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
cell division protein FtsA
RIFCSPHIGHO2_01_FULL_OD1_55_79_rifcsphigho2_01_scaffold_28082_16
R_OD1_Kaiserbacteria_55_25, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

comp(12305..12586)
DNA (282bp) protein (94aa)
Tax=RIFCSPLOWO2_01_FULL_OD1_Kaiserbacteria_55_25_curated
RIFCSPHIGHO2_01_FULL_OD1_55_79_rifcsphigho2_01_scaffold_28082_17
R_OD1_Kaiserbacteria_55_25, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

comp(12740..12922)
DNA (183bp) protein (61aa)
Tax=RIFCSPLOWO2_01_FULL_OD1_Kaiserbacteria_55_25_curated
RIFCSPHIGHO2_01_FULL_OD1_55_79_rifcsphigho2_01_scaffold_28082_18
R_OD1_Kaiserbacteria_55_25, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

13029..14228
DNA (1200bp) protein (400aa)
ftsZ; cell division protein ftsz; K03531 cell division protein FtsZ Tax=RIFCSPLOWO2_01_FULL_OD1_Kaiserbacteria_55_25_curated
cell division protein FtsZ; K03531 cell division protein FtsZ id=5803487 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
ftsZ; cell division protein ftsz
RIFCSPHIGHO2_01_FULL_OD1_55_79_rifcsphigho2_01_scaffold_28082_19
R_OD1_Kaiserbacteria_55_25, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

14319..15254
DNA (936bp) protein (312aa)
alkyl hydroperoxide reductase protein F; K03387 alkyl hydroperoxide reductase subunit F [EC:1.6.4.-] Tax=RIFCSPLOWO2_01_FULL_OD1_Kaiserbacteria_55_25_curated
Alkyl hydroperoxide reductase id=5227126 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
ahpF; alkyl hydroperoxide reductase subunit F
RIFCSPHIGHO2_01_FULL_OD1_55_79_rifcsphigho2_01_scaffold_28082_20
R_OD1_Kaiserbacteria_55_25, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

comp(15251..16276)
DNA (1026bp) protein (342aa)
IMP cyclohydrolase n=1 Tax=Kiloniella laminariae RepID=UPI000370C69B
purH; bifunctional: IMP cyclohydrolase/phosphoribosylaminoimidazolecarboxamide formyltransferase Tax=RIFCSPLOWO2_01_FULL_OD1_Kaiserbacteria_55_25_curated
purH; bifunctional: IMP cyclohydrolase/phosphoribosylaminoimidazolecarboxamide formyltransferase
RIFCSPHIGHO2_01_FULL_OD1_55_79_rifcsphigho2_01_scaffold_28082_21
R_OD1_Kaiserbacteria_55_25, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

comp(16292..16777)
DNA (486bp) protein (162aa)
# 558150 # 558764 # -1 # ;gc_cont=0.558 Tax=RIFCSPLOWO2_01_FULL_OD1_Kaiserbacteria_55_25_curated
# 558150 # 558764 # -1 # ;gc_cont=0.558 id=18315024 bin=Nanosalinarum tax=Nanosalinarum
RIFCSPHIGHO2_01_FULL_OD1_55_79_rifcsphigho2_01_scaffold_28082_22
R_OD1_Kaiserbacteria_55_25, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

comp(16825..17457)
DNA (633bp) protein (211aa)
phosphoribosyltransferase; K00762 orotate phosphoribosyltransferase [EC:2.4.2.10] Tax=RIFCSPLOWO2_01_FULL_OD1_Kaiserbacteria_55_25_curated
phosphoribosyltransferase; K00762 orotate phosphoribosyltransferase [EC:2.4.2.10] id=28951 bin=ACD24 species=ACD24 genus=ACD24 taxon_order=ACD24 taxon_class=ACD24 phylum=WWE3 tax=ACD24 organism_group=WWE3 organism_desc=WWE3
phosphoribosyltransferase
RIFCSPHIGHO2_01_FULL_OD1_55_79_rifcsphigho2_01_scaffold_28082_23
R_OD1_Kaiserbacteria_55_25, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

comp(17470..18300)
DNA (831bp) protein (277aa)
orotidine 5'-phosphate decarboxylase (EC:4.1.1.23); K01591 orotidine-5'-phosphate decarboxylase [EC:4.1.1.23] Tax=RIFCSPLOWO2_01_FULL_OD1_Kaiserbacteria_55_25_curated
pyrF; orotidine 5'-phosphate decarboxylase; K01591 orotidine-5'-phosphate decarboxylase [EC:4.1.1.23] id=4907 bin=ACD12 species=ACD12 genus=ACD12 taxon_order=ACD12 taxon_class=ACD12 phylum=OP11 tax=ACD12 organism_group=OP11 (Microgenomates) organism_desc= OP11
orotidine 5'-phosphate decarboxylase (EC:4.1.1.23)
RIFCSPHIGHO2_01_FULL_OD1_55_79_rifcsphigho2_01_scaffold_28082_24
R_OD1_Kaiserbacteria_55_25, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

comp(18315..18821)
DNA (507bp) protein (169aa)
aroK; shikimate kinase (EC:2.7.1.71); K00891 shikimate kinase [EC:2.7.1.71] Tax=RIFCSPLOWO2_01_FULL_OD1_Kaiserbacteria_55_25_curated
Shikimate kinase I (EC:2.7.1.71)
Shikimate kinase n=1 Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=Q466X5_METBF
RIFCSPHIGHO2_01_FULL_OD1_55_79_rifcsphigho2_01_scaffold_28082_25
R_OD1_Kaiserbacteria_55_25, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

comp(18818..19486)
DNA (669bp) protein (223aa)
membrane protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-N16 RepID=UPI0003B4496A
hypothetical protein Tax=RIFCSPLOWO2_01_FULL_OD1_Kaiserbacteria_55_25_curated
membrane protein
RIFCSPHIGHO2_01_FULL_OD1_55_79_rifcsphigho2_01_scaffold_28082_26
R_OD1_Kaiserbacteria_55_25, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

19559..19897
DNA (339bp) protein (113aa)
Tax=RIFCSPLOWO2_01_FULL_OD1_Kaiserbacteria_55_25_curated
Displaying 26 items

View Taxonomy