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RIFCSPHIGHO2_01_FULL_OD1_55_79_rifcsphigho2_01_scaffold_17598

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPHIGHO2_01_FULL_OD1_55_79_rifcsphigho2_01_scaffold_17598_1
R_OD1_Kaiserbacteria_55_25, Kaiserbacteria, Parcubacteria, Bacteria

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3..1613
DNA (1611bp) protein (537aa)
putative type II secretion system protein E Tax=RIFCSPLOWO2_01_FULL_OD1_Kaiserbacteria_55_25_curated
general secretion pathway protein E id=5803081 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
PulE; type II secretory pathway, ATPase PulE/tfp pilus assembly pathway, ATPase PilB
RIFCSPHIGHO2_01_FULL_OD1_55_79_rifcsphigho2_01_scaffold_17598_2
R_OD1_Kaiserbacteria_55_25, Kaiserbacteria, Parcubacteria, Bacteria

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1610..2002
DNA (393bp) protein (131aa)
Response regulator receiver protein n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PZB0_9BACT
winged helix family two component transcriptional regulator; K07658 two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP Tax=RIFCSPLOWO2_01_FULL_OD1_Kaiserbacteria
Two component transcriptional regulator, winged helix
RIFCSPHIGHO2_01_FULL_OD1_55_79_rifcsphigho2_01_scaffold_17598_3
R_OD1_Kaiserbacteria_55_25, Kaiserbacteria, Parcubacteria, Bacteria

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comp(2106..2732)
DNA (627bp) protein (209aa)
integrase catalytic subunit Tax=RIFCSPLOWO2_01_FULL_OD1_Kaiserbacteria_55_25_curated
transposase id=5802517 bin=PER_GWA2_38_35 species=PERA2_38_36 genus=PERA2_38_36 taxon_order=PERA2_38_36 taxon_class=PERA2_38_36 phylum=PER tax=PER_GWA2_38_35 organism_group=PER (Peregrinibacteria) organism_desc=This is the curated version (7 contigs can be represented as 5 scaffolds)
integrase catalytic subunit
RIFCSPHIGHO2_01_FULL_OD1_55_79_rifcsphigho2_01_scaffold_17598_4
R_OD1_Kaiserbacteria_55_25, Kaiserbacteria, Parcubacteria, Bacteria

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3221..3853
DNA (633bp) protein (211aa)
Tax=RIFCSPLOWO2_01_FULL_OD1_Kaiserbacteria_55_25_curated
RIFCSPHIGHO2_01_FULL_OD1_55_79_rifcsphigho2_01_scaffold_17598_5
R_OD1_Kaiserbacteria_55_25, Kaiserbacteria, Parcubacteria, Bacteria

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comp(4286..4528)
DNA (243bp) protein (81aa)
id=5801954 Tax=RIFCSPLOWO2_01_FULL_OD1_Kaiserbacteria_55_25_curated
id=5801954 bin=GWE2_OD1_42_8 species=GW2011_OD1_1 genus=GW2011_OD1_1 taxon_order=GW2011_OD1_1 taxon_class=GW2011_OD1_1 phylum=OD1 tax=GWE2_OD1_42_8 organism_group=OD1 (Parcubacteria) organism_desc=GW2011_OD1_1 GW2011_A
RIFCSPHIGHO2_01_FULL_OD1_55_79_rifcsphigho2_01_scaffold_17598_6
R_OD1_Kaiserbacteria_55_25, Kaiserbacteria, Parcubacteria, Bacteria

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4629..5723
DNA (1095bp) protein (365aa)
RNA-directed DNA polymerase Tax=RIFCSPLOWO2_01_FULL_OD1_Kaiserbacteria_55_25_curated
hypothetical protein id=5801953 bin=GWE2_OD1_42_8 species=GW2011_OD1_1 genus=GW2011_OD1_1 taxon_order=GW2011_OD1_1 taxon_class=GW2011_OD1_1 phylum=OD1 tax=GWE2_OD1_42_8 organism_group=OD1 (Parcubacteria) organism_desc=GW2011_OD1_1 GW2011_A
RNA-directed DNA polymerase
RIFCSPHIGHO2_01_FULL_OD1_55_79_rifcsphigho2_01_scaffold_17598_7
R_OD1_Kaiserbacteria_55_25, Kaiserbacteria, Parcubacteria, Bacteria

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5747..6808
DNA (1062bp) protein (354aa)
pilT; twitching motility protein Tax=RIFCSPLOWO2_01_FULL_OD1_Kaiserbacteria_55_25_curated
twitching motility protein; K02669 twitching motility protein PilT id=5803079 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
twitching motility protein PilT
RIFCSPHIGHO2_01_FULL_OD1_55_79_rifcsphigho2_01_scaffold_17598_8
R_OD1_Kaiserbacteria_55_25, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

6811..8016
DNA (1206bp) protein (402aa)
Type II secretion system F domain; K02653 type IV pilus assembly protein PilC Tax=RIFCSPLOWO2_01_FULL_OD1_Kaiserbacteria_55_25_curated
Type II secretion system F domain; K02653 type IV pilus assembly protein PilC id=5803078 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
type II secretory pathway, component PulF
RIFCSPHIGHO2_01_FULL_OD1_55_79_rifcsphigho2_01_scaffold_17598_9
R_OD1_Kaiserbacteria_55_25, Kaiserbacteria, Parcubacteria, Bacteria

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8164..8760
DNA (597bp) protein (199aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI00037A71CB
gspG; protein exporter, transport across outer membrane (General Secretory Pathway); K02456 general secretion pathway protein G Tax=RIFCSPLOWO2_01_FULL_OD1_Kaiserbacteria_55_25_curated
General secretion pathway protein G
RIFCSPHIGHO2_01_FULL_OD1_55_79_rifcsphigho2_01_scaffold_17598_10
R_OD1_Kaiserbacteria_55_25, Kaiserbacteria, Parcubacteria, Bacteria

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8824..9627
DNA (804bp) protein (268aa)
peptidase A24A domain-containing protein; K02654 leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] Tax=RIFCSPLOWO2_01_FULL_OD1_Kaiserbacteria_55_25_curated
prepilin peptidase (EC:3.4.23.43); K02654 leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] id=5803076 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
peptidase A24A domain-containing protein
RIFCSPHIGHO2_01_FULL_OD1_55_79_rifcsphigho2_01_scaffold_17598_11
R_OD1_Kaiserbacteria_55_25, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

9624..10190
DNA (567bp) protein (189aa)
Pili subunits Tax=RIFCSPLOWO2_01_FULL_OD1_Kaiserbacteria_55_25_curated
Pili subunits id=5803075 bin=OD1_GWC2_34_28 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
RIFCSPHIGHO2_01_FULL_OD1_55_79_rifcsphigho2_01_scaffold_17598_12
R_OD1_Kaiserbacteria_55_25, Kaiserbacteria, Parcubacteria, Bacteria

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10192..10923
DNA (732bp) protein (244aa)
transmembrane_regions Tax=RIFCSPLOWO2_01_FULL_OD1_Kaiserbacteria_55_25_curated
transmembrane_regions id=5227290 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
RIFCSPHIGHO2_01_FULL_OD1_55_79_rifcsphigho2_01_scaffold_17598_13
R_OD1_Kaiserbacteria_55_25, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

10920..11606
DNA (687bp) protein (229aa)
seg Tax=RIFCSPLOWO2_01_FULL_OD1_Kaiserbacteria_55_25_curated
seg id=5803073 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
RIFCSPHIGHO2_01_FULL_OD1_55_79_rifcsphigho2_01_scaffold_17598_14
R_OD1_Kaiserbacteria_55_25, Kaiserbacteria, Parcubacteria, Bacteria

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11584..12192
DNA (609bp) protein (203aa)
seg Tax=RIFCSPLOWO2_01_FULL_OD1_Kaiserbacteria_55_25_curated
seg id=5803072 bin=OD1_GWC2_34_28 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
RIFCSPHIGHO2_01_FULL_OD1_55_79_rifcsphigho2_01_scaffold_17598_15
R_OD1_Kaiserbacteria_55_25, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

12279..13817
DNA (1539bp) protein (513aa)
DNA ligase (EC:6.5.1.2); K01972 DNA ligase (NAD+) [EC:6.5.1.2] Tax=RIFCSPLOWO2_01_FULL_OD1_Kaiserbacteria_55_25_curated
DNA ligase; K01972 DNA ligase (NAD+) [EC:6.5.1.2] id=5803071 bin=OD1_GWC2_34_28 species=ACD11 genus=ACD11 taxon_order=ACD11 taxon_class=ACD11 phylum=OD1-i tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
DNA ligase (EC:6.5.1.2)
Displaying 15 items

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