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RIFCSPHIGHO2_01_FULL_OD1_55_79_rifcsphigho2_01_scaffold_20180

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Displaying items 1-30 of 57 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPHIGHO2_01_FULL_OD1_55_79_rifcsphigho2_01_scaffold_20180_1
R_OD1_Kaiserbacteria_55_25, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

1..270
DNA (270bp) protein (90aa)
RNP-1 like RNA-binding protein Tax=RIFCSPLOWO2_01_FULL_OD1_Kaiserbacteria_55_25_curated
RNA-binding proteins (RRM domain) id=5802739 bin=PER_GWA2_38_35 species=PER_GWC2_39_15 genus=PER_GWC2_39_15 taxon_order=PER_GWC2_39_15 taxon_class=PER_GWC2_39_15 phylum=PER tax=PER_GWA2_38_35 organism_group=PER (Peregrinibacteria) organism_desc=This is the curated version (7 contigs can be represented as 5 scaffolds)
RNP-1 like RNA-binding protein
RIFCSPHIGHO2_01_FULL_OD1_55_79_rifcsphigho2_01_scaffold_20180_2
R_OD1_Kaiserbacteria_55_25, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

391..756
DNA (366bp) protein (122aa)
Tax=RIFCSPLOWO2_01_FULL_OD1_Kaiserbacteria_55_25_curated
RIFCSPHIGHO2_01_FULL_OD1_55_79_rifcsphigho2_01_scaffold_20180_3
R_OD1_Kaiserbacteria_55_25, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

758..1915
DNA (1158bp) protein (386aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA036-E14 RepID=UPI0003691125
hypothetical protein Tax=RIFCSPLOWO2_01_FULL_OD1_Kaiserbacteria_55_25_curated
RIFCSPHIGHO2_01_FULL_OD1_55_79_rifcsphigho2_01_scaffold_20180_4
R_OD1_Kaiserbacteria_55_25, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

comp(1964..2311)
DNA (348bp) protein (116aa)
Tax=RIFCSPLOWO2_01_FULL_OD1_Kaiserbacteria_55_25_curated
RIFCSPHIGHO2_01_FULL_OD1_55_79_rifcsphigho2_01_scaffold_20180_5
R_OD1_Kaiserbacteria_55_25, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

comp(2311..2517)
DNA (207bp) protein (69aa)
Tax=RIFCSPLOWO2_01_FULL_OD1_Kaiserbacteria_55_25_curated
RIFCSPHIGHO2_01_FULL_OD1_55_79_rifcsphigho2_01_scaffold_20180_6
R_OD1_Kaiserbacteria_55_25, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

comp(2625..3077)
DNA (453bp) protein (151aa)
hypothetical protein; K09117 hypothetical protein Tax=RIFCSPLOWO2_01_FULL_OD1_Kaiserbacteria_55_25_curated
GatB/YqeY domain-containing protein; K09117 hypothetical protein id=5803496 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_55_79_rifcsphigho2_01_scaffold_20180_7
R_OD1_Kaiserbacteria_55_25, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

comp(3101..3361)
DNA (261bp) protein (87aa)
Tax=RIFCSPLOWO2_01_FULL_OD1_Kaiserbacteria_55_25_curated
RIFCSPHIGHO2_01_FULL_OD1_55_79_rifcsphigho2_01_scaffold_20180_8
R_OD1_Kaiserbacteria_55_25, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

3418..4512
DNA (1095bp) protein (365aa)
hypothetical protein Tax=RIFCSPLOWO2_01_FULL_OD1_Kaiserbacteria_55_25_curated
hypothetical protein id=15190569 bin=GWB1_SUB10_ACD81 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWB1_SUB10_ACD81 organism_group=OD1 (Parcubacteria) organism_desc=Complete
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_55_79_rifcsphigho2_01_scaffold_20180_9
R_OD1_Kaiserbacteria_55_25, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists


4536..4856
DNA (321bp) protein (107aa)
50S ribosomal protein L21; K02888 large subunit ribosomal protein L21 Tax=RIFCSPLOWO2_01_FULL_OD1_Kaiserbacteria_55_25_curated
LSU ribosomal protein L21P; K02888 large subunit ribosomal protein L21 id=5803470 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
rplU; 50S ribosomal protein L21
RIFCSPHIGHO2_01_FULL_OD1_55_79_rifcsphigho2_01_scaffold_20180_10
R_OD1_Kaiserbacteria_55_25, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

comp(4906..5103)
DNA (198bp) protein (66aa)
Tax=RIFCSPLOWO2_01_FULL_OD1_Kaiserbacteria_55_25_curated
RIFCSPHIGHO2_01_FULL_OD1_55_79_rifcsphigho2_01_scaffold_20180_11
R_OD1_Kaiserbacteria_55_25, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

comp(5161..5790)
DNA (630bp) protein (210aa)
Recombination protein RecR n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PVX0_9BACT
recR; recombination protein RecR; K06187 recombination protein RecR Tax=RIFCSPLOWO2_01_FULL_OD1_Kaiserbacteria_55_25_curated
recR; recombination protein RecR
RIFCSPHIGHO2_01_FULL_OD1_55_79_rifcsphigho2_01_scaffold_20180_12
R_OD1_Kaiserbacteria_55_25, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

comp(5868..7220)
DNA (1353bp) protein (451aa)
primary replicative DNA helicase; K02314 replicative DNA helicase [EC:3.6.4.12] Tax=RIFCSPLOWO2_01_FULL_OD1_Kaiserbacteria_55_25_curated
primary replicative DNA helicase (EC:3.6.1.-)
id=5227070 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
RIFCSPHIGHO2_01_FULL_OD1_55_79_rifcsphigho2_01_scaffold_20180_13
R_OD1_Kaiserbacteria_55_25, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

7450..8472
DNA (1023bp) protein (341aa)
hypothetical protein Tax=RIFCSPLOWO2_01_FULL_OD1_Kaiserbacteria_55_25_curated
coiled-coil id=5227114 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_55_79_rifcsphigho2_01_scaffold_20180_14
R_OD1_Kaiserbacteria_55_25, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

8619..10037
DNA (1419bp) protein (473aa)
transmembrane_regions Tax=RIFCSPLOWO2_01_FULL_OD1_Kaiserbacteria_55_25_curated
transmembrane_regions id=5803535 bin=OD1_GWC2_34_28 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
RIFCSPHIGHO2_01_FULL_OD1_55_79_rifcsphigho2_01_scaffold_20180_15
R_OD1_Kaiserbacteria_55_25, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

10041..11069
DNA (1029bp) protein (343aa)
aminodeoxychorismate lyase; K07082 UPF0755 protein Tax=RIFCSPLOWO2_01_FULL_OD1_Kaiserbacteria_55_25_curated
aminodeoxychorismate lyase; K07082 UPF0755 protein id=5803534 bin=OD1_GWC2_34_28 species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
aminodeoxychorismate lyase
RIFCSPHIGHO2_01_FULL_OD1_55_79_rifcsphigho2_01_scaffold_20180_16
R_OD1_Kaiserbacteria_55_25, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

comp(11742..12185)
DNA (444bp) protein (148aa)
transposase Tax=RIFCSPLOWO2_01_FULL_OD1_Kaiserbacteria_55_25_curated
Transposase id=5227387 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
transposase
RIFCSPHIGHO2_01_FULL_OD1_55_79_rifcsphigho2_01_scaffold_20180_17
R_OD1_Kaiserbacteria_55_25, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

comp(12190..12378)
DNA (189bp) protein (63aa)
transposase Tax=RIFCSPLOWO2_01_FULL_OD1_Kaiserbacteria_55_25_curated
RIFCSPHIGHO2_01_FULL_OD1_55_79_rifcsphigho2_01_scaffold_20180_18
R_OD1_Kaiserbacteria_55_25, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

12618..13748
DNA (1131bp) protein (377aa)
mnmA; tRNA-specific 2-thiouridylase MnmA; K00566 tRNA-specific 2-thiouridylase [EC:2.8.1.-] Tax=RIFCSPLOWO2_01_FULL_OD1_Kaiserbacteria_55_25_curated
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC:2.1.1.61); K00566 tRNA-specific 2-thiouridylase [EC:2.8.1.-] id=5803372 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
RIFCSPHIGHO2_01_FULL_OD1_55_79_rifcsphigho2_01_scaffold_20180_19
R_OD1_Kaiserbacteria_55_25, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

13808..14215
DNA (408bp) protein (136aa)
Tax=RIFCSPLOWO2_01_FULL_OD1_Kaiserbacteria_55_25_curated
RIFCSPHIGHO2_01_FULL_OD1_55_79_rifcsphigho2_01_scaffold_20180_20
R_OD1_Kaiserbacteria_55_25, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

14218..15042
DNA (825bp) protein (275aa)
ATP-cone domain protein n=1 Tax=Marivirga tractuosa (strain ATCC 23168 / DSM 4126 / NBRC 15989 / NCIMB 1408 / VKM B-1430 / H-43) RepID=E4TUD9_MARTH
ATP-cone domain-containing protein Tax=RIFCSPLOWO2_01_FULL_OD1_Kaiserbacteria_55_25_curated
ATP-cone domain-containing protein
RIFCSPHIGHO2_01_FULL_OD1_55_79_rifcsphigho2_01_scaffold_20180_21
R_OD1_Kaiserbacteria_55_25, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

15058..15573
DNA (516bp) protein (172aa)
MgtC/SapB transporter; K07507 putative Mg2+ transporter-C (MgtC) family protein Tax=RIFCSPLOWO2_01_FULL_OD1_Kaiserbacteria_55_25_curated
MgtC/SapB transporter; K07507 putative Mg2+ transporter-C (MgtC) family protein id=5227107 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
methyltransferase
RIFCSPHIGHO2_01_FULL_OD1_55_79_rifcsphigho2_01_scaffold_20180_22
R_OD1_Kaiserbacteria_55_25, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

15620..16411
DNA (792bp) protein (264aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K1Z1J2_9BACT
hypothetical protein Tax=RIFCSPLOWO2_01_FULL_OD1_Kaiserbacteria_55_25_curated
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_55_79_rifcsphigho2_01_scaffold_20180_23
R_OD1_Kaiserbacteria_55_25, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

16513..16770
DNA (258bp) protein (86aa)
ogtA; O-6-methylguanine DNA methyltransferase (EC:2.1.1.63); K00567 methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] Tax=RIFCSPLOWO2_01_FULL_OD1_Kaiserbacteria_55_25_curated
ogtA; O-6-methylguanine DNA methyltransferase (EC:2.1.1.63)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA040-L21 RepID=UPI00035D693B
RIFCSPHIGHO2_01_FULL_OD1_55_79_rifcsphigho2_01_scaffold_20180_24
R_OD1_Kaiserbacteria_55_25, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

16777..17631
DNA (855bp) protein (285aa)
hypothetical protein
hypothetical protein; K08978 putative membrane protein Tax=RIFCSPLOWO2_01_FULL_OD1_Kaiserbacteria_55_25_curated
hypothetical protein; K08978 putative membrane protein id=18248439 bin=AR5_curated_draft species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
RIFCSPHIGHO2_01_FULL_OD1_55_79_rifcsphigho2_01_scaffold_20180_25
R_OD1_Kaiserbacteria_55_25, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

17641..18321
DNA (681bp) protein (227aa)
uracil-DNA glycosylase; K03648 uracil-DNA glycosylase [EC:3.2.2.27] Tax=RIFCSPLOWO2_01_FULL_OD1_Kaiserbacteria_55_25_curated
Uracil-DNA glycosylase n=7 Tax=Bacteroides RepID=UNG_BACV8
uracil-DNA glycosylase
RIFCSPHIGHO2_01_FULL_OD1_55_79_rifcsphigho2_01_scaffold_20180_26
R_OD1_Kaiserbacteria_55_25, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

18340..18726
DNA (387bp) protein (129aa)
hypothetical protein Tax=RIFCSPLOWO2_01_FULL_OD1_Kaiserbacteria_55_25_curated
Toxin-antitoxin protein id=3736749 bin=GWC2_OD1_43_27 species=WS6_CLOSED genus=WS6_CLOSED taxon_order=WS6_CLOSED taxon_class=WS6_CLOSED phylum=WS6 tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
hypothetical protein
RIFCSPHIGHO2_01_FULL_OD1_55_79_rifcsphigho2_01_scaffold_20180_27
R_OD1_Kaiserbacteria_55_25, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

19077..20204
DNA (1128bp) protein (376aa)
Tax=RIFCSPLOWO2_01_FULL_OD1_Kaiserbacteria_55_25_curated
RIFCSPHIGHO2_01_FULL_OD1_55_79_rifcsphigho2_01_scaffold_20180_28
RHI_OD1_Kaiserbacteria_53_13, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

comp(20279..21550)
DNA (1272bp) protein (424aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2GGW6_9BACT
peptidase M16 domain-containing protein Tax=RIFCSPHIGHO2_12_FULL_OD1_Kaiserbacteria_53_13_curated
peptidase M16 domain-containing protein
RIFCSPHIGHO2_01_FULL_OD1_55_79_rifcsphigho2_01_scaffold_20180_29
R_OD1_Kaiserbacteria_55_25, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

21619..22113
DNA (495bp) protein (165aa)
nudix hydrolase; K03574 7,8-dihydro-8-oxoguanine triphosphatase [EC:3.6.1.-] id=5093759 bin=PER_GWE2_39_6 species=PER_GWE2_38_7 genus=PER_GWE2_38_7 taxon_order=PER_GWE2_38_7 taxon_class=PER_GWE2_38_7 phylum=PER tax=PER_GWE2_39_6 organism_group=PER (Peregrinibacteria)
mutT/nudix family protein Tax=RIFCSPLOWO2_01_FULL_OD1_Kaiserbacteria_55_25_curated
phosphohydrolase
RIFCSPHIGHO2_01_FULL_OD1_55_79_rifcsphigho2_01_scaffold_20180_30
R_OD1_Kaiserbacteria_55_25, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists


22120..23223
DNA (1104bp) protein (368aa)
alaS; Alanine--tRNA ligase (EC:6.1.1.7) Tax=RIFCSPLOWO2_01_FULL_OD1_Kaiserbacteria_55_25_curated
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA040-L21 RepID=UPI00036E61CB
alanyl-tRNA synthetase
Displaying items 1-30 of 57 in total

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