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RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_11793

Search features with annotation key words

Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_11793_1
R_RIF_OD1_10_39_10, RIF-OD1-1, Parcubacteria, Bacteria

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1..864
DNA (864bp) protein (288aa)
Tax=RIFCSPLOWO2_02_RIF_OD1_10_39_10_curated
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_11793_2

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1298..1684
DNA (387bp) protein (129aa)
30S ribosomal protein S8 {ECO:0000313|EMBL:KKR46208.1}; TaxID=1618814 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_40_14.;"
30S ribosomal protein S8; K02994 small subunit ribosomal protein S8 id=5803326 bin=OD1_GWC2_34_28 species=sediment metagenome genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
rpsH; 30S ribosomal protein S8
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_11793_3

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1817..2362
DNA (546bp) protein (182aa)
50S ribosomal protein L6 {ECO:0000313|EMBL:KKR46209.1}; TaxID=1618814 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_40_14.;"
50S ribosomal protein L6; K02933 large subunit ribosomal protein L6 id=5803327 bin=OD1_GWC2_34_28 species=sediment metagenome genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
50S ribosomal protein L6
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_11793_4
R_RIF_OD1_10_39_10, RIF-OD1-1, Parcubacteria, Bacteria

Not on your lists


2501..2851
DNA (351bp) protein (117aa)
50S ribosomal protein L18; K02881 large subunit ribosomal protein L18 Tax=RIFCSPLOWO2_02_RIF_OD1_10_39_10_curated
rplR; 50S ribosomal protein L18; K02881 large subunit ribosomal protein L18 id=5803328 bin=OD1_GWC2_34_28 species=unknown genus=Pediococcus taxon_order=Lactobacillales taxon_class=Bacilli phylum=Firmicutes tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
50S ribosomal protein L18
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_11793_5
R_RIF_OD1_10_39_10, RIF-OD1-1, Parcubacteria, Bacteria

Not on your lists


2861..3439
DNA (579bp) protein (193aa)
30S ribosomal protein S5 n=1 Tax=Parcubacteria bacterium SCGC AAA040-L21 RepID=UPI00038194DC
MCYN0193; 30S ribosomal protein S5 Tax=RIFCSPLOWO2_02_RIF_OD1_10_39_10_curated
rpsE; 30S ribosomal protein S5
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_11793_6
R_RIF_OD1_10_39_10, RIF-OD1-1, Parcubacteria, Bacteria

Not on your lists


3555..3995
DNA (441bp) protein (147aa)
50S ribosomal protein L15 n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PWN2_9BACT
50S ribosomal protein L15; K02876 large subunit ribosomal protein L15 Tax=RIFCSPLOWO2_02_RIF_OD1_10_39_10_curated
50S ribosomal protein L15
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_11793_7

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4023..5282
DNA (1260bp) protein (420aa)
Protein translocase subunit SecY {ECO:0000313|EMBL:KKR31846.1}; TaxID=1618963 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWF2_39_8b.;"
preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY id=5803331 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
preprotein translocase subunit SecY
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_11793_8
R_RIF_OD1_10_39_10, RIF-OD1-1, Parcubacteria, Bacteria

Not on your lists

5366..5974
DNA (609bp) protein (203aa)
Repressor in ring oxydation complex/phenylacetic acid degradation pathway related protein (PaaX) n=1 Tax=uncultured bacterium RepID=K2EYU1_9BACT
PaaX domain protein; K02616 phenylacetic acid degradation operon negative regulatory protein Tax=RIFCSPLOWO2_02_RIF_OD1_10_39_10_curated
PaaX family transcriptional regulator
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_11793_9
R_RIF_OD1_10_39_10, RIF-OD1-1, Parcubacteria, Bacteria

Not on your lists

6129..6797
DNA (669bp) protein (223aa)
Conserved hypothetical membrane protein n=1 Tax=Chlorobaculum parvum (strain NCIB 8327) RepID=B3QN68_CHLP8
hypothetical protein Tax=RIFCSPLOWO2_02_RIF_OD1_10_39_10_curated
hypothetical protein
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_11793_10
R_RIF_OD1_10_39_10, RIF-OD1-1, Parcubacteria, Bacteria

Not on your lists

6840..7136
DNA (297bp) protein (99aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2FDU3_9BACT
DNA polymerase subunit beta; K07075 Tax=RIFCSPLOWO2_02_RIF_OD1_10_39_10_curated
DNA polymerase subunit beta
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_11793_11
R_RIF_OD1_10_39_10, RIF-OD1-1, Parcubacteria, Bacteria

Not on your lists

7123..7440
DNA (318bp) protein (106aa)
Uncharacterized protein n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Q8TSM8_METAC
hypothetical protein Tax=RIFCSPLOWO2_02_RIF_OD1_10_39_10_curated
hypothetical protein
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_11793_12

Not on your lists

7446..8036
DNA (591bp) protein (197aa)
adk; adenylate kinase (EC:2.7.4.3); K00939 adenylate kinase [EC:2.7.4.3] id=5803018 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
Uncharacterized protein {ECO:0000313|EMBL:KKR46218.1}; TaxID=1618814 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_40_14.;"
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_11793_13
R_RIF_OD1_10_39_10, RIF-OD1-1, Parcubacteria, Bacteria

Not on your lists

8082..8351
DNA (270bp) protein (90aa)
Addiction module antitoxin, RelB/DinJ family n=1 Tax=Treponema socranskii subsp. socranskii VPI DR56BR1116 = ATCC 35536 RepID=U1FM93_TRESO
Addiction module antitoxin, RelB/DinJ family Tax=RIFCSPLOWO2_02_RIF_OD1_10_39_10_curated
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_11793_14
R_RIF_OD1_10_39_10, RIF-OD1-1, Parcubacteria, Bacteria

Not on your lists

8355..8615
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=uncultured bacterium (gcode 4) RepID=K2A2W1_9BACT
Uncharacterized protein Tax=RIFCSPLOWO2_02_RIF_OD1_10_39_10_curated
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_11793_15
R_RIF_OD1_10_39_10, RIF-OD1-1, Parcubacteria, Bacteria

Not on your lists

8632..9399
DNA (768bp) protein (256aa)
methionine aminopeptidase; K01265 methionyl aminopeptidase [EC:3.4.11.18] Tax=RIFCSPLOWO2_02_RIF_OD1_10_39_10_curated
methionine aminopeptidase (EC:3.4.11.18); K01265 methionyl aminopeptidase [EC:3.4.11.18] id=5803017 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
methionine aminopeptidase
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_11793_16
R_RIF_OD1_10_39_10, RIF-OD1-1, Parcubacteria, Bacteria

Not on your lists

9456..9644
DNA (189bp) protein (63aa)
Tax=RIFCSPLOWO2_02_RIF_OD1_10_39_10_curated
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_11793_17
R_RIF_OD1_10_39_10, RIF-OD1-1, Parcubacteria, Bacteria

Not on your lists

9644..9901
DNA (258bp) protein (86aa)
Tax=RIFCSPLOWO2_02_RIF_OD1_10_39_10_curated
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_11793_18
R_RIF_OD1_10_39_10, RIF-OD1-1, Parcubacteria, Bacteria

Not on your lists

9938..11008
DNA (1071bp) protein (357aa)
hypothetical protein
source missing description 57..237 Tax=RIFCSPLOWO2_02_RIF_OD1_10_39_10_curated
source missing description 57..237 id=725610 bin=RAAC2_WWE3 species=RAAC2_WWE3 genus=RAAC2_WWE3 taxon_order=RAAC2_WWE3 taxon_class=RAAC2_WWE3 phylum=WWE3 tax=RAAC2_WWE3 organism_group=WWE3
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_11793_19
R_RIF_OD1_10_39_10, RIF-OD1-1, Parcubacteria, Bacteria

Not on your lists

11542..11820
DNA (279bp) protein (93aa)
id=1797346 Tax=RIFCSPLOWO2_02_RIF_OD1_10_39_10_curated
id=1797346 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_11793_20
R_RIF_OD1_10_39_10, RIF-OD1-1, Parcubacteria, Bacteria

Not on your lists

11804..12424
DNA (621bp) protein (207aa)
hypothetical protein Tax=RIFCSPLOWO2_02_RIF_OD1_10_39_10_curated
Uncharacterized protein id=1797344 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
hypothetical protein
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_11793_21
R_RIF_OD1_10_39_10, RIF-OD1-1, Parcubacteria, Bacteria

Not on your lists

12607..13008
DNA (402bp) protein (134aa)
hypothetical protein Tax=RIFCSPLOWO2_02_RIF_OD1_10_39_10_curated
seg id=5803014 bin=OD1_GWC2_34_28 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
hypothetical protein
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_11793_22
R_RIF_OD1_10_39_10, RIF-OD1-1, Parcubacteria, Bacteria

Not on your lists

13001..14374
DNA (1374bp) protein (458aa)
Metallo-beta-lactamase family protein, RNA-specific n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PY00_9BACT
putative exonuclease of the beta-lactamase fold involved in RNA processing; K07576 metallo-beta-lactamase family protein Tax=RIFCSPLOWO2_02_RIF_OD1_10_39_10_curated
beta-lactamase
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_11793_23
R_RIF_OD1_10_39_10, RIF-OD1-1, Parcubacteria, Bacteria

Not on your lists

14420..14608
DNA (189bp) protein (63aa)
Tax=RIFCSPLOWO2_02_RIF_OD1_10_39_10_curated
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_11793_24
R_RIF_OD1_10_39_10, RIF-OD1-1, Parcubacteria, Bacteria

Not on your lists

14614..14877
DNA (264bp) protein (88aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA010-E09 RepID=UPI000373B1FF
plasmid stabilization system-related protein Tax=RIFCSPLOWO2_02_RIF_OD1_10_39_10_curated
plasmid stabilization system-related protein
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_11793_25
R_RIF_OD1_10_39_10, RIF-OD1-1, Parcubacteria, Bacteria

Not on your lists


comp(15012..15356)
DNA (345bp) protein (115aa)
50S ribosomal protein L20 n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PWM2_9BACT
50S ribosomal protein L20; K02887 large subunit ribosomal protein L20 Tax=RIFCSPLOWO2_02_RIF_OD1_10_39_10_curated
50S ribosomal protein L20
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_11793_26
R_RIF_OD1_10_39_10, RIF-OD1-1, Parcubacteria, Bacteria

Not on your lists

comp(15362..15493)
DNA (132bp) protein (44aa)
Tax=RIFCSPLOWO2_02_RIF_OD1_10_39_10_curated
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_11793_27
R_RIF_OD1_10_39_10, RIF-OD1-1, Parcubacteria, Bacteria

Not on your lists


comp(15516..15704)
DNA (189bp) protein (63aa)
Ribosomal protein L35 Tax=RIFCSPLOWO2_02_RIF_OD1_10_39_10_curated
Ribosomal protein L35 id=5803011 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_11793_28
R_RIF_OD1_10_39_10, RIF-OD1-1, Parcubacteria, Bacteria

Not on your lists

comp(15797..16306)
DNA (510bp) protein (170aa)
translation initiation factor 3 (bIF-3) Tax=RIFCSPLOWO2_02_RIF_OD1_10_39_10_curated
translation initiation factor IF-3; K02520 translation initiation factor IF-3 id=5803010 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
translation initiation factor 3 (bIF-3)
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_11793_29
R_RIF_OD1_10_39_10, RIF-OD1-1, Parcubacteria, Bacteria

Not on your lists

16374..17204
DNA (831bp) protein (277aa)
Orotidine-5'-phosphate decarboxylase (EC:4.1.1.23); K01591 orotidine-5'-phosphate decarboxylase [EC:4.1.1.23] Tax=RIFCSPLOWO2_02_RIF_OD1_10_39_10_curated
Orotidine-5'-phosphate decarboxylase (EC:4.1.1.23)
Orotidine 5'-phosphate decarboxylase id=1955283 bin=GWB2_Nitrospirae_rel_47_37 species=Thermincola potens genus=Thermincola taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_11793_30
R_RIF_OD1_10_39_10, RIF-OD1-1, Parcubacteria, Bacteria

Not on your lists

17216..17932
DNA (717bp) protein (239aa)
Tax=RIFCSPLOWO2_02_RIF_OD1_10_39_10_curated
Displaying items 1-30 of 39 in total

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