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RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_3746

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_3746_1
R_RIF_OD1_10_39_10, RIF-OD1-1, Parcubacteria, Bacteria

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3..1115
DNA (1113bp) protein (371aa)
spoVE; stage V sporulation protein E Tax=RIFCSPLOWO2_02_RIF_OD1_10_39_10_curated
spoVE; stage V sporulation protein E; K03588 cell division protein FtsW id=5803520 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
spoVE; stage V sporulation protein E
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_3746_2
R_RIF_OD1_10_39_10, RIF-OD1-1, Parcubacteria, Bacteria

Not on your lists

1181..2332
DNA (1152bp) protein (384aa)
UDP-N-acetylglucosamine-N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC:2.4.1.227); K02563 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyroph
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-UDP N-acetylglucosamine transferase (EC:2.4.1.227); K02563 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] id=5803519 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
UDP-N-acetylglucosamine-N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC:2.4.1.227)
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_3746_3

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2360..3730
DNA (1371bp) protein (457aa)
glutamyl-tRNA synthetase; K01885 glutamyl-tRNA synthetase [EC:6.1.1.17] id=5803517 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
Glutamate-tRNA ligase 1 {ECO:0000313|EMBL:KKR45462.1}; TaxID=1618814 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_40_14.;"
gltX; glutamyl-tRNA synthetase
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_3746_4
R_RIF_OD1_10_39_10, RIF-OD1-1, Parcubacteria, Bacteria

Not on your lists

3738..5024
DNA (1287bp) protein (429aa)
peptidase M23 Tax=RIFCSPLOWO2_02_RIF_OD1_10_39_10_curated
peptidase M23b id=5803516 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
peptidase M23
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_3746_5
R_RIF_OD1_10_39_10, RIF-OD1-1, Parcubacteria, Bacteria

Not on your lists

comp(5242..5706)
DNA (465bp) protein (155aa)
Tax=RIFCSPLOWO2_02_RIF_OD1_10_39_10_curated
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_3746_6
R_RIF_OD1_10_39_10, RIF-OD1-1, Parcubacteria, Bacteria

Not on your lists

comp(5985..6485)
DNA (501bp) protein (167aa)
Tax=RIFCSPLOWO2_02_RIF_OD1_10_39_10_curated
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_3746_7

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comp(6501..7595)
DNA (1095bp) protein (365aa)
Chaperone protein DnaJ {ECO:0000313|EMBL:KKR45458.1}; TaxID=1618814 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_40_14.;"
chaperone protein DnaJ; K03686 molecular chaperone DnaJ id=5803415 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
chaperone protein dnaJ
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_3746_8
R_RIF_OD1_10_39_10, RIF-OD1-1, Parcubacteria, Bacteria

Not on your lists

7683..7880
DNA (198bp) protein (66aa)
Tax=RIFCSPLOWO2_02_RIF_OD1_10_39_10_curated
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_3746_9

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comp(8130..10034)
DNA (1905bp) protein (635aa)
chaperone protein DnaK (EC:1.3.1.74); K04043 molecular chaperone DnaK id=5803414 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
Chaperone protein DnaK {ECO:0000313|EMBL:KKR45456.1}; TaxID=1618814 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_40_14.;"
dnaK; molecular chaperone DnaK
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_3746_10
R_RIF_OD1_10_39_10, RIF-OD1-1, Parcubacteria, Bacteria

Not on your lists

comp(10162..10491)
DNA (330bp) protein (110aa)
Tax=RIFCSPLOWO2_02_RIF_OD1_10_39_10_curated
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_3746_11
R_RIF_OD1_10_39_10, RIF-OD1-1, Parcubacteria, Bacteria

Not on your lists

comp(10470..10592)
DNA (123bp) protein (41aa)
Tax=RIFCSPLOWO2_02_RIF_OD1_10_39_10_curated
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_3746_12
R_RIF_OD1_10_39_10, RIF-OD1-1, Parcubacteria, Bacteria

Not on your lists

comp(10605..11210)
DNA (606bp) protein (202aa)
GrpE protein; K03687 molecular chaperone GrpE Tax=RIFCSPLOWO2_02_RIF_OD1_10_39_10_curated
GrpE protein; K03687 molecular chaperone GrpE id=5803413 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
GrpE protein
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_3746_13

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comp(11277..11684)
DNA (408bp) protein (136aa)
30S ribosomal protein S9 n=1 Tax=Parcubacteria bacterium SCGC AAA010-E09 RepID=UPI00035CD22E
30S ribosomal protein S9 {ECO:0000313|EMBL:KKR19670.1}; TaxID=1618954 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWF1_39_37.;"
rpsI; 30S ribosomal protein S9
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_3746_14

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comp(11686..12030)
DNA (345bp) protein (115aa)
50S ribosomal protein L13 {ECO:0000313|EMBL:KKR45451.1}; TaxID=1618814 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_40_14.;"
50S ribosomal protein L13; K02871 large subunit ribosomal protein L13 id=5803410 bin=OD1_GWC2_34_28 species=sediment metagenome genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
rplM; 50S ribosomal protein L13
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_3746_15

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comp(12111..12458)
DNA (348bp) protein (116aa)
50S ribosomal protein L17 n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PXB1_9BACT
50S ribosomal protein L17 {ECO:0000313|EMBL:KKR45450.1}; TaxID=1618814 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_40_14.;"
50S ribosomal protein L17
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_3746_16
R_RIF_OD1_10_39_10, RIF-OD1-1, Parcubacteria, Bacteria

Not on your lists

comp(12572..13525)
DNA (954bp) protein (318aa)
DNA-directed RNA polymerase subunit alpha; K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] Tax=RIFCSPLOWO2_02_RIF_OD1_10_39_10_curated
DNA-directed RNA polymerase subunit alpha; K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] id=5803408 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
DNA-directed RNA polymerase subunit alpha, nonfunctional
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_3746_17
R_RIF_OD1_10_39_10, RIF-OD1-1, Parcubacteria, Bacteria

Not on your lists


comp(13642..14250)
DNA (609bp) protein (203aa)
rpsD; ribosomal protein S4; K02986 small subunit ribosomal protein S4 Tax=RIFCSPLOWO2_02_RIF_OD1_10_39_10_curated
30S ribosomal protein S4 id=5227099 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
rpsD; 30S ribosomal protein S4
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_3746_18

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comp(14369..14800)
DNA (432bp) protein (144aa)
Ribosomal protein S11 {ECO:0000313|EMBL:KKR45447.1}; TaxID=1618814 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_40_14.;"
30S ribosomal protein S11; K02948 small subunit ribosomal protein S11 id=5803406 bin=OD1_GWC2_34_28 species=sediment metagenome genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
30S ribosomal protein S11
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_3746_19
R_RIF_OD1_10_39_10, RIF-OD1-1, Parcubacteria, Bacteria

Not on your lists


comp(14939..15316)
DNA (378bp) protein (126aa)
30S ribosomal protein S13; K02952 small subunit ribosomal protein S13 Tax=RIFCSPLOWO2_02_RIF_OD1_10_39_10_curated
30S ribosomal protein S13; K02952 small subunit ribosomal protein S13 id=5803405 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
30S ribosomal protein S13
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_3746_20
R_RIF_OD1_10_39_10, RIF-OD1-1, Parcubacteria, Bacteria

Not on your lists

comp(15666..15887)
DNA (222bp) protein (74aa)
infA; translation initiation factor IF-1 (EC:3.6.5.3); K02518 translation initiation factor IF-1 Tax=RIFCSPLOWO2_02_RIF_OD1_10_39_10_curated
translation initiation factor IF-1; K02518 translation initiation factor IF-1 id=5803404 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
infA; translation initiation factor IF-1
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_3746_21
R_RIF_OD1_10_39_10, RIF-OD1-1, Parcubacteria, Bacteria

Not on your lists

comp(15931..17322)
DNA (1392bp) protein (464aa)
seg Tax=RIFCSPLOWO2_02_RIF_OD1_10_39_10_curated
seg id=5803403 bin=OD1_GWC2_34_28 species=candidate division TM7 genomosp. GTL1 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Candidatus Saccharibacteria tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_3746_22

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comp(17361..18686)
DNA (1326bp) protein (442aa)
alanyl-tRNA synthetase (EC:6.1.1.7); K01872 alanyl-tRNA synthetase [EC:6.1.1.7] id=5803401 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
Alanine-tRNA ligase {ECO:0000313|EMBL:KKR45443.1}; TaxID=1618814 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_40_14.;"
Alanine-tRNA ligase
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_3746_23
R_RIF_OD1_10_39_10, RIF-OD1-1, Parcubacteria, Bacteria

Not on your lists

comp(18713..19135)
DNA (423bp) protein (141aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2AAM0_9BACT
hypothetical protein; K08978 putative membrane protein Tax=RIFCSPLOWO2_02_RIF_OD1_10_39_10_curated
hypothetical protein
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_3746_24
R_RIF_OD1_10_39_10, RIF-OD1-1, Parcubacteria, Bacteria

Not on your lists

comp(19137..19406)
DNA (270bp) protein (90aa)
Tax=RIFCSPLOWO2_02_RIF_OD1_10_39_10_curated
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_3746_25
R_RIF_OD1_10_39_10, RIF-OD1-1, Parcubacteria, Bacteria

Not on your lists

comp(19424..20032)
DNA (609bp) protein (203aa)
hypothetical protein; K02334 DNA polymerase bacteriophage-type [EC:2.7.7.7] Tax=RIFCSPLOWO2_02_RIF_OD1_10_39_10_curated
hypothetical protein; K02334 DNA polymerase bacteriophage-type [EC:2.7.7.7] id=5803008 bin=OD1_GWC2_34_28 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
hypothetical protein
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_3746_26
R_RIF_OD1_10_39_10, RIF-OD1-1, Parcubacteria, Bacteria

Not on your lists

comp(20044..20916)
DNA (873bp) protein (291aa)
ATP-cone domain-containing protein Tax=RIFCSPLOWO2_02_RIF_OD1_10_39_10_curated
ATP-cone domain-containing protein id=5803374 bin=OD1_GWC2_34_28 species=Marivirga tractuosa genus=Marivirga taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
ATP-cone domain-containing protein
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_3746_27

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comp(21038..22183)
DNA (1146bp) protein (382aa)
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC:2.1.1.61); K00566 tRNA-specific 2-thiouridylase [EC:2.8.1.-] id=5803372 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
tRNA-specific 2-thiouridylase MnmA {ECO:0000313|EMBL:KKR45438.1}; TaxID=1618814 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_40_14.;"
tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_3746_28
R_RIF_OD1_10_39_10, RIF-OD1-1, Parcubacteria, Bacteria

Not on your lists

comp(22247..22498)
DNA (252bp) protein (84aa)
Tax=RIFCSPLOWO2_02_RIF_OD1_10_39_10_curated
RIFCSPHIGHO2_02_FULL_OD1_39_82_rifcsphigho2_02_scaffold_3746_29
R_RIF_OD1_10_39_10, RIF-OD1-1, Parcubacteria, Bacteria

Not on your lists

comp(22543..23073)
DNA (531bp) protein (177aa)
Putative uncharacterized protein n=2 Tax=delta proteobacterium MLMS-1 RepID=Q1NJ41_9DELT id=120057 bin=ACD76 species=delta proteobacterium MLMS-1 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=ACD76 organism_group=OD1 (Parcubacteria) organism_desc=OD1
hypothetical protein Tax=RIFCSPLOWO2_02_RIF_OD1_10_39_10_curated
Displaying 29 items

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