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rifcsphigho2_02_scaffold_2016

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Displaying 28 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsphigho2_02_scaffold_2016_1
RIFOXYC2_FULL_WOR_1_41_25_curated, WOR-1, Bacteria

Not on your lists

comp(2..997)
DNA (996bp) protein (332aa)
thrS; threonyl-tRNA synthetase (EC:6.1.1.3); K01868 threonyl-tRNA synthetase [EC:6.1.1.3] Tax=RIFOXYC2_FULL_WOR_1_41_25_curated
thrS; threonyl-tRNA synthetase (EC:6.1.1.3)
Threonine--tRNA ligase id=4748130 bin=GWA2_Planctomycete_KSU_39_15 species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Planctomycete_KSU_39_15 organism_group=Planctomycetes
rifcsphigho2_02_scaffold_2016_2
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(1152..2303)
DNA (1152bp) protein (384aa)
1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267); K00099 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267] Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267)
1-deoxy-D-xylulose 5-phosphate reductoisomerase n=1 Tax=Thermincola potens (strain JR) RepID=D5XF01_THEPJ
rifcsphigho2_02_scaffold_2016_3
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

2364..4208
DNA (1845bp) protein (615aa)
Uncharacterized protein n=1 Tax=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) RepID=Q3A4Z5_PELCD
AsmA family protein; K07289 AsmA protein Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
AsmA family protein
rifcsphigho2_02_scaffold_2016_4
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

4239..4562
DNA (324bp) protein (108aa)
Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
rifcsphigho2_02_scaffold_2016_5
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

4611..5132
DNA (522bp) protein (174aa)
orotate phosphoribosyltransferase; K00762 orotate phosphoribosyltransferase [EC:2.4.2.10] Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
Orotate phosphoribosyltransferase n=1 Tax=Methanocaldococcus villosus KIN24-T80 RepID=N6VR54_9EURY
orotate phosphoribosyltransferase
rifcsphigho2_02_scaffold_2016_trna_1
unknown

Not on your lists

5123..5195
DNA (73bp)
transferRNA
rifcsphigho2_02_scaffold_2016_6
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

5276..6463
DNA (1188bp) protein (396aa)
Elongation factor Tu n=1 Tax=Thermoanaerobacterium xylanolyticum (strain ATCC 49914 / DSM 7097 / LX-11) RepID=F6BGH0_THEXL
translation elongation factor Tu; K02358 elongation factor Tu Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
translation elongation factor Tu
rifcsphigho2_02_scaffold_2016_7
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

6456..7877
DNA (1422bp) protein (474aa)
VanW family protein n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=A8MEY0_ALKOO
VanW family protein Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
VanW family protein
rifcsphigho2_02_scaffold_2016_8
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

7874..8662
DNA (789bp) protein (263aa)
lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (EC:3.5.1.-); K02535 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_
lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (EC:3.5.1.-)
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase n=1 Tax=Desulfovibrio alkalitolerans DSM 16529 RepID=S7TB23_9DELT
rifcsphigho2_02_scaffold_2016_9
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

8659..9936
DNA (1278bp) protein (426aa)
acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase (EC:2.3.1.129); K00677 UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase (EC:2.3.1.129)
Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase id=2187898 bin=GWE2_RBX1_39_32 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
rifcsphigho2_02_scaffold_2016_10
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

9933..11084
DNA (1152bp) protein (384aa)
lipid-A-disaccharide synthase (EC:2.4.1.182); K00748 lipid-A-disaccharide synthase [EC:2.4.1.182] Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
Lipid-A-disaccharide synthase (EC:2.4.1.182)
Lipid-A-disaccharide synthase n=1 Tax=Sporomusa ovata DSM 2662 RepID=T0IPQ6_9FIRM
rifcsphigho2_02_scaffold_2016_11
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

11244..12347
DNA (1104bp) protein (368aa)
Pleiotropic regulatory protein n=1 Tax=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) RepID=B5YEV9_DICT6
pleiotropic regulatory protein Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
pleiotropic regulatory protein
rifcsphigho2_02_scaffold_2016_12
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

12344..13267
DNA (924bp) protein (308aa)
NADH-Dependent dehydrogenase family n=2 Tax=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) RepID=B1XP03_SYNP2
NADH-dependent dehydrogenase family protein; K03810 virulence factor Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
NADH-dependent dehydrogenase family protein
rifcsphigho2_02_scaffold_2016_13
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

13258..14304
DNA (1047bp) protein (349aa)
peptidase M50 membrane-associated zinc metallopeptidase; K11749 regulator of sigma E protease [EC:3.4.24.-] Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
hypothetical protein n=1 Tax=Orenia marismortui RepID=UPI000362DEDF
peptidase M50 membrane-associated zinc metallopeptidase
rifcsphigho2_02_scaffold_2016_14
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(14305..15153)
DNA (849bp) protein (283aa)
methenyltetrahydrofolate cyclohydrolase (EC:3.5.4.9); K01491 methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] Tax=RIFCSPLOWO2_02_FULL_WOR_
folD; bifunctional 5,10 methylene-tetrahydrofolate dehydrogenase/cyclohydrolase (EC:1.5.1.5 3.5.4.9); K01491 methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] id=14425518 bin=bin1_lowGC species=Clostridium methylpentosum genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin1_lowGC organism_group=Unknown_CP
methenyltetrahydrofolate cyclohydrolase (EC:3.5.4.9)
rifcsphigho2_02_scaffold_2016_15
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(15221..16579)
DNA (1359bp) protein (453aa)
tRNA modification GTPase trmE; K03650 tRNA modification GTPase [EC:3.6.-.-] Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
tRNA modification GTPase MnmE n=1 Tax=Sporomusa ovata DSM 2662 RepID=T0JUA1_9FIRM
tRNA modification GTPase trmE
rifcsphigho2_02_scaffold_2016_16
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(16584..17204)
DNA (621bp) protein (207aa)
Protein jag n=1 Tax=Clostridium botulinum C str. Eklund RepID=B1BC50_CLOBO
jag protein; K06346 spoIIIJ-associated protein Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
jag protein
rifcsphigho2_02_scaffold_2016_17
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(17207..18154)
DNA (948bp) protein (316aa)
60 kDa inner membrane insertion protein n=1 Tax=Brachyspira sp. CAG:484 RepID=R5H6A0_9SPIR
hypothetical protein; K03217 preprotein translocase subunit YidC Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
hypothetical protein
rifcsphigho2_02_scaffold_2016_18
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(18403..18828)
DNA (426bp) protein (142aa)
Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
rifcsphigho2_02_scaffold_2016_19
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

19199..20566
DNA (1368bp) protein (456aa)
Chromosomal replication initiator protein DnaA n=1 Tax=Clostridium sporogenes ATCC 15579 RepID=J7TCS3_CLOSG
dnaA; DNA replication protein DnaA Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
dnaA; DNA replication protein DnaA
rifcsphigho2_02_scaffold_2016_20
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

20777..21913
DNA (1137bp) protein (379aa)
DNA polymerase III subunit beta (EC:2.7.7.7); K02338 DNA polymerase III subunit beta [EC:2.7.7.7] Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
DNA polymerase III subunit beta (EC:2.7.7.7)
DNA polymerase III subunit beta id=1827161 bin=GWD2_RBX1-related_39_127 species=Halobacteroides halobius genus=Halobacteroides taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
rifcsphigho2_02_scaffold_2016_21
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

21913..22194
DNA (282bp) protein (94aa)
Putative RNA-binding protein containing Zn ribbon n=1 Tax=Halobacteroides halobius (strain ATCC 35273 / DSM 5150 / MD-1) RepID=L0K7E7_HALHC
putative RNA-binding protein containing Zn ribbon Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
putative RNA-binding protein containing Zn ribbon
rifcsphigho2_02_scaffold_2016_22
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

22198..24171
DNA (1974bp) protein (658aa)
gyrB; DNA gyrase subunit B (EC:5.99.1.3); K02470 DNA gyrase subunit B [EC:5.99.1.3] Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
gyrB; DNA gyrase subunit B (EC:5.99.1.3)
DNA gyrase subunit B n=1 Tax=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) RepID=Q3A8P7_CARHZ
rifcsphigho2_02_scaffold_2016_23
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists


24193..26700
DNA (2508bp) protein (836aa)
gyrA; DNA gyrase subunit A (EC:5.99.1.3); K02469 DNA gyrase subunit A [EC:5.99.1.3] Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
gyrA; DNA gyrase subunit A (EC:5.99.1.3)
DNA gyrase subunit A n=1 Tax=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) RepID=Q3A8P8_CARHZ
rifcsphigho2_02_scaffold_2016_24
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(26679..27899)
DNA (1221bp) protein (407aa)
glycine dehydrogenase subunit alpha (EC:1.4.4.2); K00282 glycine dehydrogenase subunit 1 [EC:1.4.4.2] Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
glycine dehydrogenase subunit alpha (EC:1.4.4.2)
Probable glycine dehydrogenase [decarboxylating] subunit 1 n=1 Tax=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) RepID=B2A2T2_NATTJ
rifcsphigho2_02_scaffold_2016_25
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(27900..28274)
DNA (375bp) protein (125aa)
Glycine cleavage system H protein n=1 Tax=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) RepID=GCSH_CARHZ
gcvH; glycine cleavage system H protein; K02437 glycine cleavage system H protein Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
gcvH; glycine cleavage system H protein
rifcsphigho2_02_scaffold_2016_26
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(28271..28603)
DNA (333bp) protein (111aa)
Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
rifcsphigho2_02_scaffold_2016_27
R_WOR_1_46_20, WOR-1, Bacteria

Not on your lists

comp(28624..29673)
DNA (1050bp) protein (350aa)
glycine cleavage system T protein; K00605 aminomethyltransferase [EC:2.1.2.10] Tax=RIFCSPLOWO2_02_FULL_WOR_1_46_20_curated
Aminomethyltransferase id=2161536 bin=GWE2_RBX1_39_32 species=Thermobaculum terrenum genus=Thermobaculum taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
glycine cleavage system protein T
Displaying 28 items

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