ggKbase home page

RIFCSPHIGHO2_02_FULL_OD1_49_17_rifcsphigho2_02_scaffold_5397

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPHIGHO2_02_FULL_OD1_49_17_rifcsphigho2_02_scaffold_5397_1

Not on your lists

2..1624
DNA (1623bp) protein (541aa)
hypothetical protein
Uncharacterized protein (Fragment) id=2899562 bin=GWA1_ZB2_49_26 species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
Uncharacterized protein {ECO:0000313|EMBL:KKW08273.1}; Flags: Fragment;; TaxID=1618797 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA1_49_26.;"
RIFCSPHIGHO2_02_FULL_OD1_49_17_rifcsphigho2_02_scaffold_5397_2

Not on your lists

1608..1979
DNA (372bp) protein (124aa)
id=2899561 bin=GWA1_ZB2_49_26 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
Uncharacterized protein {ECO:0000313|EMBL:KKW08272.1}; TaxID=1618797 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA1_49_26.;"
RIFCSPHIGHO2_02_FULL_OD1_49_17_rifcsphigho2_02_scaffold_5397_3

Not on your lists

2016..2597
DNA (582bp) protein (194aa)
id=2899560 bin=GWA1_ZB2_49_26 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
Uncharacterized protein {ECO:0000313|EMBL:KKW08271.1}; TaxID=1618797 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA1_49_26.;"
RIFCSPHIGHO2_02_FULL_OD1_49_17_rifcsphigho2_02_scaffold_5397_4
GWB1_OD1_49_12, Parcubacteria, Bacteria

Not on your lists

2631..4037
DNA (1407bp) protein (469aa)
id=2899559 bin=GWA1_ZB2_49_26 species=ACD7 genus=ACD7 taxon_order=ACD7 taxon_class=ACD7 phylum=OD1-i tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
Tax=GWB1_OD1_49_12
RIFCSPHIGHO2_02_FULL_OD1_49_17_rifcsphigho2_02_scaffold_5397_5

Not on your lists

4073..5080
DNA (1008bp) protein (336aa)
id=2899558 bin=GWA1_ZB2_49_26 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
Uncharacterized protein {ECO:0000313|EMBL:KKW13155.1}; TaxID=1618853 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_50_10.;"
RIFCSPHIGHO2_02_FULL_OD1_49_17_rifcsphigho2_02_scaffold_5397_6
GWB1_OD1_49_12, Parcubacteria, Bacteria

Not on your lists

5279..8539
DNA (3261bp) protein (1087aa)
DNA-directed RNA polymerase subunit beta Tax=GWB1_OD1_49_12
DNA-directed RNA polymerase subunit beta id=2899555 bin=GWA1_ZB2_49_26 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
DNA-directed RNA polymerase subunit beta
RIFCSPHIGHO2_02_FULL_OD1_49_17_rifcsphigho2_02_scaffold_5397_7

Not on your lists

8536..10893
DNA (2358bp) protein (786aa)
DNA-directed RNA polymerase subunit beta {ECO:0000313|EMBL:KKW13796.1}; TaxID=1618853 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_50_10.;"
DNA-directed RNA polymerase subunit beta' id=2899553 bin=GWA1_ZB2_49_26 species=ACD11 genus=ACD11 taxon_order=ACD11 taxon_class=ACD11 phylum=OD1-i tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
DNA-directed RNA polymerase subunit beta'
RIFCSPHIGHO2_02_FULL_OD1_49_17_rifcsphigho2_02_scaffold_5397_8

Not on your lists

10890..12035
DNA (1146bp) protein (382aa)
DNA-directed RNA polymerase subunit beta {ECO:0000313|EMBL:KKW13796.1}; TaxID=1618853 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_50_10.;"
DNA-directed RNA polymerase subunit beta' id=2899553 bin=GWA1_ZB2_49_26 species=ACD11 genus=ACD11 taxon_order=ACD11 taxon_class=ACD11 phylum=OD1-i tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
DNA-directed RNA polymerase subunit beta'
RIFCSPHIGHO2_02_FULL_OD1_49_17_rifcsphigho2_02_scaffold_5397_9
GWB1_OD1_49_12, Parcubacteria, Bacteria

Not on your lists

12108..14270
DNA (2163bp) protein (721aa)
Cell divisionFtsK/SpoIIIE (Fragment) Tax=GWB1_OD1_49_12
Cell divisionFtsK/SpoIIIE (Fragment) id=2899551 bin=GWA1_ZB2_49_26 species=GW2011_OD1_1 genus=GW2011_OD1_1 taxon_order=GW2011_OD1_1 taxon_class=GW2011_OD1_1 phylum=OD1 tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
cell division FtsK/SpoIIIE
RIFCSPHIGHO2_02_FULL_OD1_49_17_rifcsphigho2_02_scaffold_5397_10
GWB1_OD1_49_12, Parcubacteria, Bacteria

Not on your lists


14327..15334
DNA (1008bp) protein (336aa)
Protein RecA id=2670125 bin=GWA1_ZB2_49_26 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
Protein RecA Tax=GWB1_OD1_49_12
recombinase A
RIFCSPHIGHO2_02_FULL_OD1_49_17_rifcsphigho2_02_scaffold_5397_11

Not on your lists

comp(15503..15955)
DNA (453bp) protein (151aa)
Single-stranded DNA-binding protein id=2670121 bin=GWA1_ZB2_49_26 species=ACD63 genus=ACD63 taxon_order=ACD63 taxon_class=ACD63 phylum=OD1 tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
Single-stranded DNA-binding protein {ECO:0000313|EMBL:KKW08325.1}; TaxID=1618797 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA1_49_26.;"
single-strand binding protein (Ssb)
RIFCSPHIGHO2_02_FULL_OD1_49_17_rifcsphigho2_02_scaffold_5397_12

Not on your lists


comp(15965..16378)
DNA (414bp) protein (138aa)
30S ribosomal protein S6 id=2670118 bin=GWA1_ZB2_49_26 species=Cyanobacterium aponinum genus=Cyanobacterium taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
30S ribosomal protein S6 {ECO:0000313|EMBL:KKW08324.1}; TaxID=1618797 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA1_49_26.;"
RIFCSPHIGHO2_02_FULL_OD1_49_17_rifcsphigho2_02_scaffold_5397_13

Not on your lists

16487..17281
DNA (795bp) protein (265aa)
HAD superfamily hydrolase id=2670115 bin=GWA1_ZB2_49_26 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
HAD superfamily hydrolase {ECO:0000313|EMBL:KKW08323.1}; TaxID=1618797 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA1_49_26.;"
RIFCSPHIGHO2_02_FULL_OD1_49_17_rifcsphigho2_02_scaffold_5397_14

Not on your lists

comp(17292..18278)
DNA (987bp) protein (329aa)
trpS; tryptophan--tRNA ligase TrpS (EC:6.1.1.2)
Tryptophan--tRNA ligase id=2670112 bin=GWA1_ZB2_49_26 species=unknown genus=Thermoanaerobacterium taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
Tryptophan-tRNA ligase {ECO:0000313|EMBL:KKW08322.1}; TaxID=1618797 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA1_49_26.;"
RIFCSPHIGHO2_02_FULL_OD1_49_17_rifcsphigho2_02_scaffold_5397_15

Not on your lists

comp(18286..19989)
DNA (1704bp) protein (568aa)
rnjA; ribonuclease J 1 (EC:3.1.-.-)
RNA-metabolising metallo-beta-lactamase {ECO:0000313|EMBL:KKW08321.1}; TaxID=1618797 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA1_49_26.;"
RNA-metabolising metallo-beta-lactamase id=2670109 bin=GWA1_ZB2_49_26 species=ACD63 genus=ACD63 taxon_order=ACD63 taxon_class=ACD63 phylum=OD1 tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
RIFCSPHIGHO2_02_FULL_OD1_49_17_rifcsphigho2_02_scaffold_5397_trna_2
unknown

Not on your lists

comp(20033..20114)
DNA (82bp)
transferRNA
RIFCSPHIGHO2_02_FULL_OD1_49_17_rifcsphigho2_02_scaffold_5397_16

Not on your lists

comp(20132..21940)
DNA (1809bp) protein (603aa)
Extracellular solute-binding protein {ECO:0000313|EMBL:KKW13787.1}; TaxID=1618853 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_50_10.;"
Extracellular solute-binding protein id=2670106 bin=GWA1_ZB2_49_26 species=ACD63 genus=ACD63 taxon_order=ACD63 taxon_class=ACD63 phylum=OD1 tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
family 5 extracellular solute-binding protein
RIFCSPHIGHO2_02_FULL_OD1_49_17_rifcsphigho2_02_scaffold_5397_17

Not on your lists

comp(22149..22379)
DNA (231bp) protein (77aa)
Preprotein translocase, SecG subunit id=2670101 bin=GWA1_ZB2_49_26 species=ACD9 genus=ACD9 taxon_order=ACD9 taxon_class=ACD9 phylum=OD1-i tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
Preprotein translocase, SecG subunit {ECO:0000313|EMBL:KKW08319.1}; TaxID=1618797 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA1_49_26.;"
preprotein translocase subunit SecG
RIFCSPHIGHO2_02_FULL_OD1_49_17_rifcsphigho2_02_scaffold_5397_18

Not on your lists

comp(22386..22736)
DNA (351bp) protein (117aa)
Putative uncharacterized protein id=2670096 bin=GWA1_ZB2_49_26 species=Spirosoma linguale genus=Spirosoma taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
Uncharacterized protein {ECO:0000313|EMBL:KKW08318.1}; TaxID=1618797 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA1_49_26.;"
membrane protein
RIFCSPHIGHO2_02_FULL_OD1_49_17_rifcsphigho2_02_scaffold_5397_19

Not on your lists

comp(22747..24069)
DNA (1323bp) protein (441aa)
Excinuclease ABC C subunit domain protein id=2670092 bin=GWA1_ZB2_49_26 species=ACD63 genus=ACD63 taxon_order=ACD63 taxon_class=ACD63 phylum=OD1 tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
Excinuclease ABC C subunit domain protein {ECO:0000313|EMBL:KKW08317.1}; TaxID=1618797 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA1_49_26.;"
putative excinuclease ABC, C subunit domain protein
RIFCSPHIGHO2_02_FULL_OD1_49_17_rifcsphigho2_02_scaffold_5397_20

Not on your lists

comp(24337..24570)
DNA (234bp) protein (78aa)
id=2670091 bin=GWA1_ZB2_49_26 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
Uncharacterized protein {ECO:0000313|EMBL:KKW08316.1}; TaxID=1618797 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA1_49_26.;"
RIFCSPHIGHO2_02_FULL_OD1_49_17_rifcsphigho2_02_scaffold_5397_21

Not on your lists

24709..27543
DNA (2835bp) protein (945aa)
UvrABC system protein A {ECO:0000313|EMBL:KKW13782.1}; TaxID=1618853 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_50_10.;"
UvrABC system protein A id=2670085 bin=GWA1_ZB2_49_26 species=ACD41 genus=ACD41 taxon_order=ACD41 taxon_class=ACD41 phylum=OD1 tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
excinuclease ABC subunit A
RIFCSPHIGHO2_02_FULL_OD1_49_17_rifcsphigho2_02_scaffold_5397_22

Not on your lists

27674..27964
DNA (291bp) protein (97aa)
10 kDa chaperonin id=2670079 bin=GWA1_ZB2_49_26 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
10 kDa chaperonin {ECO:0000313|EMBL:KKW08314.1}; TaxID=1618797 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA1_49_26.;"
molecular chaperone GroES
RIFCSPHIGHO2_02_FULL_OD1_49_17_rifcsphigho2_02_scaffold_5397_23

Not on your lists

27980..29611
DNA (1632bp) protein (544aa)
60 kDa chaperonin id=2670074 bin=GWA1_ZB2_49_26 species=GW2011_OD1_1 genus=GW2011_OD1_1 taxon_order=GW2011_OD1_1 taxon_class=GW2011_OD1_1 phylum=OD1 tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
60 kDa chaperonin {ECO:0000313|EMBL:KKW08313.1}; TaxID=1618797 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA1_49_26.;"
groEL; molecular chaperone GroEL
RIFCSPHIGHO2_02_FULL_OD1_49_17_rifcsphigho2_02_scaffold_5397_24
GWC1_OD1_48_11, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

29736..30350
DNA (615bp) protein (205aa)
LemA family protein {ECO:0000313|EMBL:KKU92796.1}; TaxID=1619027 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Yanofskybacteria) bacterium GW2011_GWC1_48_11.;"
LemA family protein id=2670069 bin=GWA1_ZB2_49_26 species=Elusimicrobium minutum genus=Elusimicrobium taxon_order=Elusimicrobiales taxon_class=Elusimicrobia phylum=Elusimicrobia tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
LemA family protein
RIFCSPHIGHO2_02_FULL_OD1_49_17_rifcsphigho2_02_scaffold_5397_25
GWB1_OD1_49_12, Parcubacteria, Bacteria

Not on your lists

30357..31265
DNA (909bp) protein (303aa)
Protease HtpX homolog Tax=GWB1_OD1_49_12
Protease HtpX homolog id=2670064 bin=GWA1_ZB2_49_26 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
hypothetical protein
RIFCSPHIGHO2_02_FULL_OD1_49_17_rifcsphigho2_02_scaffold_5397_26
GWB1_OD1_49_12, Parcubacteria, Bacteria

Not on your lists

31262..31795
DNA (534bp) protein (178aa)
Uncharacterized protein Tax=GWB1_OD1_49_12
Uncharacterized protein id=2670059 bin=GWA1_ZB2_49_26 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
RIFCSPHIGHO2_02_FULL_OD1_49_17_rifcsphigho2_02_scaffold_5397_trna_1
unknown

Not on your lists

31803..31889
DNA (87bp)
transferRNA
Displaying 28 items

View Taxonomy