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RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_2996

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_2996_1
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(49..576)
DNA (528bp) protein (176aa)
Glycine cleavage system regulatory protein n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BPN0_9GAMM
glycine cleavage system regulatory protein Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
glycine cleavage system protein R
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_2996_2
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

831..1703
DNA (873bp) protein (291aa)
dihydrodipicolinate synthase (EC:4.2.1.52); K01714 dihydrodipicolinate synthase [EC:4.2.1.52] Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
dihydrodipicolinate synthase DapA (EC:4.3.3.7)
4-hydroxy-tetrahydrodipicolinate synthase n=2 Tax=sulfur-oxidizing symbionts RepID=G2DC55_9GAMM
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_2996_3
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

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1713..2810
DNA (1098bp) protein (366aa)
Uncharacterized protein n=1 Tax=Amphimedon queenslandica RepID=I1EUY4_AMPQE
nlpB; putative lipoprotein; K07287 lipoprotein-34 Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
lipoprotein-34
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_2996_4
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2828..4222)
DNA (1395bp) protein (465aa)
GTPase Der n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5BVX6_NITHN
small GTP-binding protein; K03977 GTP-binding protein Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
GTP-binding protein EngA
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_2996_5
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4334..5785)
DNA (1452bp) protein (484aa)
Outer membrane protein assembly factor BamB n=1 Tax=Beggiatoa alba B18LD RepID=I3CKX2_9GAMM
outer membrane assembly lipoprotein YfgL Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
beta-barrel assembly machine subunit BamB
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_2996_6
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5788..6432)
DNA (645bp) protein (215aa)
Putative membrane protein n=2 Tax=sulfur-oxidizing symbionts RepID=G2DCS3_9GAMM
hypothetical protein Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
hypothetical protein
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_2996_7
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6559..7404)
DNA (846bp) protein (282aa)
Uncharacterized protein n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MM14_9BACT
hypothetical protein Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
hypothetical protein
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_2996_8
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7730..8611)
DNA (882bp) protein (294aa)
Periplasmic serine proteases (ClpP class) n=1 Tax=Methanocella conradii (strain DSM 24694 / JCM 17849 / CGMCC 1.5162 / HZ254) RepID=H8I630_METCZ
Periplasmic serine proteases (ClpP class) Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
Periplasmic serine proteases (ClpP class)
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_2996_9
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8614..8865)
DNA (252bp) protein (84aa)
Uncharacterized protein Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
Uncharacterized protein id=2199492 bin=GWB2_Deltaproteobacteria_65_81 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB2_Deltaproteobacteria_65_81 organism_group=Deltaproteobacteria organism_desc=Good +
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_2996_10
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(8902..10197)
DNA (1296bp) protein (432aa)
histidyl-tRNA synthetase (EC:6.1.1.21); K01892 histidyl-tRNA synthetase [EC:6.1.1.21] Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
Histidine--tRNA ligase n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BQ22_9GAMM
histidyl-tRNA synthetase
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_2996_11
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10264..11229)
DNA (966bp) protein (322aa)
Uncharacterized protein n=1 Tax=Aeromonas molluscorum 848 RepID=R1F190_9GAMM
cytoskeletal protein RodZ; K15539 cytoskeleton protein RodZ Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
cytoskeletal protein RodZ
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_2996_12
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11232..12002)
DNA (771bp) protein (257aa)
TPR repeat containing protein n=1 Tax=Beggiatoa sp. PS RepID=A7BZ18_9GAMM
type IV pilus biogenesis/stability protein PilW; K02656 type IV pilus assembly protein PilF Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
type IV pilus biogenesis/stability protein PilW
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_2996_13
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11999..13090)
DNA (1092bp) protein (364aa)
radical SAM enzyme, Cfr family; K06941 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
Dual-specificity RNA methyltransferase RlmN n=1 Tax=Nitrosococcus watsoni (strain C-113) RepID=D8KBW0_NITWC
radical SAM enzyme, Cfr family
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_2996_14
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13099..13548)
DNA (450bp) protein (150aa)
Nucleoside-diphosphate kinase (EC:2.7.4.6); K00940 nucleoside-diphosphate kinase [EC:2.7.4.6] Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
nucleoside-diphosphate kinase (EC:2.7.4.6)
nucleoside diphosphate kinase n=1 Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI00038047DA
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_2996_15
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13625..13963)
DNA (339bp) protein (113aa)
Rieske (2Fe-2S) iron-sulfur domain protein n=1 Tax=Thioalkalivibrio thiocyanoxidans ARh 4 RepID=G4DIY5_9GAMM
hcaC_[H]; 3-phenylpropionate dioxygenase ferredoxin subunit Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
ferredoxin
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_2996_16
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13972..14535)
DNA (564bp) protein (188aa)
Predicted metal-sulfur cluster biosynthetic enzyme n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F1C7_9PROT
hypothetical protein Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
hypothetical protein
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_2996_17
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14543..14998)
DNA (456bp) protein (152aa)
hypothetical protein n=1 Tax=zeta proteobacterium SCGC AB-604-B04 RepID=UPI000376A357
SUF system FeS assembly protein Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
SUF system FeS assembly protein
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_2996_18
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14998..16257)
DNA (1260bp) protein (420aa)
cysteine desulfurase (EC:2.8.1.7); K11717 cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16] Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
cysteine desulfurase (EC:2.8.1.7)
Cysteine desulfurase n=2 Tax=Nitrosococcus oceani RepID=Q3J8A6_NITOC
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_2996_19
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16254..17585)
DNA (1332bp) protein (444aa)
Iron-regulated ABC transporter permease protein SufD n=2 Tax=Nitrosococcus oceani RepID=Q3J8A5_NITOC
FeS assembly protein SufD; K09015 Fe-S cluster assembly protein SufD Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
FeS assembly protein SufD
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_2996_20
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17582..18337)
DNA (756bp) protein (252aa)
transporter n=1 Tax=zeta proteobacterium SCGC AB-604-O16 RepID=UPI00036DD371
sufC; Fe-S cluster assembly ATP-binding protein SufC; K09013 Fe-S cluster assembly ATP-binding protein Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
sufC; Fe-S cluster assembly ATP-binding protein SufC
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_2996_21
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18379..19827)
DNA (1449bp) protein (483aa)
cysteine desulfurase activator complex subunit SufB n=1 Tax=zeta proteobacterium SCGC AB-604-O16 RepID=UPI00037D126E
FeS assembly protein SufB; K09014 Fe-S cluster assembly protein SufB Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
FeS assembly protein SufB
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_2996_22
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19828..20172)
DNA (345bp) protein (115aa)
Iron-sulfur cluster assembly protein n=1 Tax=Gallibacterium anatis (strain UMN179) RepID=F4HD37_GALAU
iron-sulfur cluster assembly protein; K13628 iron-sulfur cluster assembly protein Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
iron-sulfur cluster assembly protein
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_2996_23
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20156..20647)
DNA (492bp) protein (164aa)
Iron-sulfur cluster assembly transcription factor IscR n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5C3R5_NITHN
iron-sulfur cluster assembly transcription factor IscR; K13643 Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_cur
iron-sulfur cluster assembly transcription factor IscR
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_2996_24
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21242..22525
DNA (1284bp) protein (428aa)
8-amino-7-oxononanoate synthase (EC:2.3.1.47) Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
8-amino-7-oxononanoate synthase (EC:2.3.1.47)
8-amino-7-oxononanoate synthase n=1 Tax=Trichodesmium erythraeum (strain IMS101) RepID=Q113V0_TRIEI
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_2996_25
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22537..23352
DNA (816bp) protein (272aa)
3-dehydrosphinganine reductase (EC:1.1.1.102) Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
3-dehydrosphinganine reductase (EC:1.1.1.102)
Ribitol type dehydrogenase protein n=1 Tax=Lyngbya sp. (strain PCC 8106) RepID=A0YLY2_LYNSP
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_2996_26
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23381..24652)
DNA (1272bp) protein (424aa)
Uncharacterized protein n=1 Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LSD5_HALO1
hypothetical protein Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
hypothetical protein
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_2996_27
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24768..25703
DNA (936bp) protein (312aa)
CDP-diglyceride synthetase (EC:2.7.7.41) Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
CDP-diglyceride synthetase (EC:2.7.7.41)
Phosphatidate cytidylyltransferase n=1 Tax=Eubacterium sp. CAG:146 RepID=R5G763_9FIRM
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_2996_28
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25643..25795)
DNA (153bp) protein (51aa)
cyclic peptide transporter
cyclic peptide transporter Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
Putative cyclic peptide transporter id=3504660 bin=GWF2_Bacteroidetes_33_16 species=Fulvivirga imtechensis genus=Fulvivirga taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_33_16 organism_group=Bacteroidetes organism_desc=Good
Displaying 28 items

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