ggKbase home page

RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_3361

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_3361_1
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..1822
DNA (1821bp) protein (607aa)
peptide ABC transporter ATPase (EC:3.6.3.24 3.6.3.31)
Oligopeptide/dipeptide ABC transporter, ATP-binding protein-like n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BME2_9GAMM
peptide ABC transporter ATPase; K02031 peptide/nickel transport system ATP-binding protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_3361_2
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2018..3475)
DNA (1458bp) protein (486aa)
Soluble lytic murein transglycosylase-related regulatory proteins (Some contain LysM/invasin domains) n=1 Tax=Cycloclasticus zancles 7-ME RepID=S5TGI4_9GAMM
Soluble lytic murein transglycosylase-related regulatory proteins (some contain LysM/invasin domains) Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
Soluble lytic murein transglycosylase-related regulatory proteins (some contain LysM/invasin domains)
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_3361_3
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3611..4387)
DNA (777bp) protein (259aa)
hydroxyacylglutathione hydrolase (EC:3.1.2.6); K01069 hydroxyacylglutathione hydrolase [EC:3.1.2.6] Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
hydroxyacylglutathione hydrolase (EC:3.1.2.6)
Hydroxyacylglutathione hydrolase n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BUS9_9GAMM
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_3361_4
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4422..5138
DNA (717bp) protein (239aa)
hypothetical protein n=1 Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI00037CFCAA
type 11 methyltransferase Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
type 11 methyltransferase
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_3361_5
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5810..5923)
DNA (114bp) protein (38aa)
Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_3361_6
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6681..6869
DNA (189bp) protein (63aa)
hypothetical protein n=1 Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI00036A2F04
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
hypothetical protein
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_3361_7
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6854..7168
DNA (315bp) protein (105aa)
Uncharacterized protein n=1 Tax=Methyloglobulus morosus KoM1 RepID=V5B199_9GAMM
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
hypothetical protein
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_3361_8
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7165..7317
DNA (153bp) protein (51aa)
Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_3361_9
RBG_19FT_COMBO_Nitrospirae_55_12_curated, Nitrospirae, Bacteria

Not on your lists

7361..7594
DNA (234bp) protein (78aa)
Tax=RBG_19FT_COMBO_Nitrospirae_55_12_curated
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_3361_10
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7629..7865)
DNA (237bp) protein (79aa)
Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_3361_11
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8183..8929
DNA (747bp) protein (249aa)
DNA polymerase III, epsilon subunit (EC:2.7.7.7); K02342 DNA polymerase III subunit epsilon [EC:2.7.7.7] Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
DNA polymerase III, epsilon subunit (EC:2.7.7.7)
DNA polymerase III, epsilon subunit n=1 Tax=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) RepID=Q21J48_SACD2
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_3361_12
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9017..9829
DNA (813bp) protein (271aa)
ABC transporter ATP-binding protein n=1 Tax=Phaeospirillum fulvum MGU-K5 RepID=S9TYE6_PHAFV
ABC transporter ATP-binding protein; K01990 ABC-2 type transport system ATP-binding protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
ABC transporter, ATP-binding subunit
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_3361_13
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9826..10653
DNA (828bp) protein (276aa)
ABC-2 type transporter n=1 Tax=Methylovorus sp. (strain SIP3-4) RepID=C6X9C1_METSD
ABC-2 type transporter Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
ABC-2 type transporter
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_3361_14
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10842..11069
DNA (228bp) protein (76aa)
Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_3361_15
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11586..11876
DNA (291bp) protein (97aa)
Anti-sigma factor antagonist n=2 Tax=sulfur-oxidizing symbionts RepID=G2DCT3_9GAMM
anti-anti-sigma regulatory factor Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
anti-anti-sigma regulatory factor
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_3361_16
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11839..12681
DNA (843bp) protein (281aa)
ABC-type transport system involved in resistance to organic solvents, permease component n=1 Tax=Caenispirillum salinarum AK4 RepID=K9HDR8_9PROT
hypothetical protein; K02066 putative ABC transport system permease protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
conserved protein of unknown function(similar to ABC-type transport system protein)
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_3361_17
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12684..13505
DNA (822bp) protein (274aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00036826E3
ABC-type transport system; K02065 putative ABC transport system ATP-binding protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
ABC-type transport system
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_3361_18
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13549..14529
DNA (981bp) protein (327aa)
ABC-type transport system subunit n=1 Tax=uncultured bacterium RepID=C5JAQ5_9BACT
ABC-type transport system Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
ABC-type transport system
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_3361_19
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14532..15134
DNA (603bp) protein (201aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00037B4826
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_3361_20
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16242..21059
DNA (4818bp) protein (1606aa)
hypothetical protein n=1 Tax=Lamprocystis purpurea RepID=UPI0003732CA5
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
hypothetical protein
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_3361_21
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21071..22468
DNA (1398bp) protein (466aa)
Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_3361_22
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22472..23731
DNA (1260bp) protein (420aa)
Uncharacterized protein n=1 Tax=Bacteriovorax sp. BSW11_IV RepID=T0R3M9_9DELT
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
hypothetical protein
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_3361_23
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23805..24296
DNA (492bp) protein (164aa)
Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_3361_24
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24597..26195
DNA (1599bp) protein (533aa)
lnt; Apolipoprotein N-acyltransferase (ALP N-acyltransferase) (EC:2.3.1.-) Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
lnt; Apolipoprotein N-acyltransferase (ALP N-acyltransferase) (EC:2.3.1.-)
Apolipoprotein N-acyltransferase (ALP N-acyltransferase) n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MKU9_9BACT
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_3361_25
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26192..28759
DNA (2568bp) protein (856aa)
Serine phosphatase n=1 Tax=uncultured bacterium RepID=C5JAQ1_9BACT
regulator of sigma-B activity, putative Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
putative phosphoserine phosphatase RsbU like protein
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_3361_26
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28763..29182)
DNA (420bp) protein (140aa)
Serine phosphatase RsbU n=1 Tax=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) RepID=Q2WAI7_MAGSA
Serine phosphatase RsbU; K07315 sigma-B regulation protein RsbU (phosphoserine phosphatase) Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
Serine phosphatase RsbU
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_3361_27
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29583..30998
DNA (1416bp) protein (472aa)
gltX; glutamyl-tRNA synthetase (EC:6.1.1.17); K01885 glutamyl-tRNA synthetase [EC:6.1.1.17] Tax=RBG_16_Gamma2_65_34_curated
glutaminyl-tRNA synthetase n=1 Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI00035FD3D0
gltX; glutamyl-tRNA synthetase
Displaying 27 items

View Taxonomy