ggKbase home page

RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_9163

Search features with annotation key words

Displaying items 1-30 of 43 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_9163_1
RBG_19FT_COMBO_Gammaproteobacteria_61_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..463)
DNA (462bp) protein (154aa)
hypothetical protein n=1 Tax=Singularimonas variicoloris RepID=UPI0003669B43
DMT(drug/metabolite transporter) superfamily permease Tax=RBG_19FT_COMBO_Gammaproteobacteria_61_10_curated
DMT(drug/metabolite transporter) superfamily permease
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_9163_2
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(655..1257)
DNA (603bp) protein (201aa)
Non-canonical purine NTP pyrophosphatase n=2 Tax=sulfur-oxidizing symbionts RepID=G2DBJ4_9GAMM
RdgB/HAM1 family non-canonical purine NTP pyrophosphatase Tax=RBG_16_Gamma2_65_34_curated
RdgB/HAM1 family non-canonical purine NTP pyrophosphatase
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_9163_3
RBG_16_Gamma2_64_11_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1361..2077)
DNA (717bp) protein (239aa)
ribonuclease PH (EC:2.7.7.56); K00989 ribonuclease PH [EC:2.7.7.56] Tax=RBG_16_Gamma2_64_11_curated
ribonuclease PH n=1 Tax=Endozoicomonas elysicola RepID=UPI0003743B47
rph; ribonuclease PH
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_9163_4
R_Gamma2_65_16, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2228..3181)
DNA (954bp) protein (318aa)
serine/threonine protein phosphatase Tax=RIFCSPHIGHO2_01_FULL_Gamma2_65_16_curated
serine/threonine protein phosphatase
Serine/threonine protein phosphatase id=1342773 bin=GWE1_T_denit_62_9 species=unknown genus=unknown taxon_order=unknown taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_9163_5
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3189..4121)
DNA (933bp) protein (311aa)
XRE family transcriptional regulator n=1 Tax=Thauera aminoaromatica S2 RepID=N6Z5Z7_9RHOO
putative serine/threonine protein kinase Tax=RBG_16_Gamma2_65_34_curated
XRE family transcriptional regulator
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_9163_6
R_Gamma2_65_16, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4257..5147
DNA (891bp) protein (297aa)
Uncharacterized protein n=1 Tax=endosymbiont of unidentified scaly snail isolate Monju RepID=S6BEN7_9GAMM
YicC domain-containing protein Tax=RIFCSPHIGHO2_01_FULL_Gamma2_65_16_curated
YicC domain-containing protein
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_9163_7
R_Gamma2_65_16, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5357..6001
DNA (645bp) protein (215aa)
gmk; guanylate kinase (EC:2.7.4.8) Tax=RIFCSPHIGHO2_01_FULL_Gamma2_65_16_curated
gmk; guanylate kinase (EC:2.7.4.8)
Guanylate kinase n=7 Tax=Cronobacter sakazakii RepID=A7MQB4_CROS8
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_9163_8
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6504..8756
DNA (2253bp) protein (751aa)
GTP diphosphokinase (EC:2.7.6.5); K00951 GTP pyrophosphokinase [EC:2.7.6.5] Tax=RBG_16_Gamma2_65_34_curated
bifunctional (p)ppGpp synthetase II/ guanosine-3'''',5''''-bis pyrophosphate 3''''-pyrophosphohydrolase n=1 Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI000360D46C
(p)ppGpp synthetase
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_9163_9
R_Gamma2_65_16, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8855..9241
DNA (387bp) protein (129aa)
Endoribonuclease L-PSP n=1 Tax=Thiocystis violascens (strain ATCC 17096 / DSM 198 / 6111) RepID=I3YG52_THIV6
endoribonuclease L-PSP Tax=RIFCSPHIGHO2_01_FULL_Gamma2_65_16_curated
endoribonuclease L-PSP
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_9163_10
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9329..11401
DNA (2073bp) protein (691aa)
ATP-dependent DNA helicase RecG; K03655 ATP-dependent DNA helicase RecG [EC:3.6.4.12] Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
ATP-dependent DNA helicase RecG n=1 Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI000364428C
ATP-dependent DNA helicase RecG
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_9163_11
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11476..12048
DNA (573bp) protein (191aa)
Probable chorismate pyruvate-lyase n=1 Tax=endosymbiont of Tevnia jerichonana (vent Tica) RepID=G2FEN3_9GAMM
ubiC; 4-hydroxybenzoate synthetase Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
chorismate--pyruvate lyase
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_9163_12
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12175..13032
DNA (858bp) protein (286aa)
ubiA; 4-hydroxybenzoate octaprenyltransferase (EC:2.5.1.-); K03179 4-hydroxybenzoate octaprenyltransferase [EC:2.5.1.-] Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
hypothetical protein n=1 Tax=Methylosarcina fibrata RepID=UPI00035DFC6E
4-hydroxybenzoate polyprenyl transferase
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_9163_13
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13196..13810
DNA (615bp) protein (205aa)
glutathione S-transferase; K00799 glutathione S-transferase [EC:2.5.1.18] Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
Glutathione S-transferase, N-terminal:Glutathione S-transferase, C-terminal n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=Q47AW2_DECAR
glutathione S-transferase
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_9163_14
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13980..14993
DNA (1014bp) protein (338aa)
Sodium/calcium exchanger membrane region n=1 Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JN39_9GAMM
sodium/calcium exchanger membrane region; K07301 inner membrane protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
sodium/calcium exchanger membrane region
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_9163_15
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15058..15906
DNA (849bp) protein (283aa)
shikimate dehydrogenase (EC:1.1.1.25); K00014 shikimate dehydrogenase [EC:1.1.1.25] Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
aroE; shikimate 5-dehydrogenase (EC:1.1.1.25)
Shikimate dehydrogenase n=1 Tax=Cellvibrio japonicus (strain Ueda107) RepID=AROE_CELJU
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_9163_16
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16081..16608)
DNA (528bp) protein (176aa)
anhydrase n=1 Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI000369BA6E
transferase Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
carbonic anhydrase, family 3
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_9163_17
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16730..17818)
DNA (1089bp) protein (363aa)
Serine/threonine protein kinase n=1 Tax=Pandoraea sp. SD6-2 RepID=R7WYM2_9BURK
serine/threonine protein kinase Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
serine/threonine protein kinase
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_9163_18
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17843..19858
DNA (2016bp) protein (672aa)
oligopeptidase A (EC:3.4.24.70); K01414 oligopeptidase A [EC:3.4.24.70] Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
oligopeptidase A (EC:3.4.24.70)
Oligopeptidase A n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5BVL3_NITHN
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_9163_19
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19870..20472
DNA (603bp) protein (201aa)
SH3, type 3 domain protein n=1 Tax=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) RepID=A1U1U3_MARAV
SH3 type 3 domain-containing protein; K07184 SH3 domain protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
SH3 type 3 domain-containing protein
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_9163_20
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20476..21183
DNA (708bp) protein (236aa)
Glutaredoxin-like protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AE82_9PROT
glutaredoxin-like protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
glutaredoxin-like protein
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_9163_21
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21217..21990
DNA (774bp) protein (258aa)
Exodeoxyribonuclease III Xth n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6A9G1_9PROT
exodeoxyribonuclease III Xth Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
exodeoxyribonuclease III Xth
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_9163_22
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21977..23008
DNA (1032bp) protein (344aa)
NosX n=1 Tax=Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) RepID=Q7WX88_CUPNH
nosX; NosX; K03734 thiamine biosynthesis lipoprotein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
nosX; NosX
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_9163_23
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23308..23790
DNA (483bp) protein (161aa)
hypothetical protein n=1 Tax=Amphritea japonica RepID=UPI000363E859
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
hypothetical protein
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_9163_24
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23828..24826
DNA (999bp) protein (333aa)
iron deficiency-induced protein A n=1 Tax=Thiobacillus denitrificans RepID=UPI00037C8C72
ABC transporter iron binding protein; K02012 iron(III) transport system substrate-binding protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
ABC transporter iron binding protein
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_9163_25
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24830..25027
DNA (198bp) protein (66aa)
Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_9163_26
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25120..26343
DNA (1224bp) protein (408aa)
Conserved hypothetical signal peptide protein n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SKW3_THIDA
putative signal peptide protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
signal peptide protein
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_9163_27
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26423..26944
DNA (522bp) protein (174aa)
FMN-binding domain protein n=1 Tax=Shewanella loihica (strain ATCC BAA-1088 / PV-4) RepID=A3QHN9_SHELP
FMN-binding domain-containing protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
FMN-binding domain-containing protein
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_9163_28
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26941..27687
DNA (747bp) protein (249aa)
PepSY-associated TM helix domain-containing protein n=1 Tax=gamma proteobacterium BDW918 RepID=I2JH14_9GAMM
PepSY-associated TM helix domain-containing protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
PepSY-associated TM helix domain-containing protein
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_9163_29
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27745..29421
DNA (1677bp) protein (559aa)
ABC-type Fe3+ transport system, permease component n=1 Tax=Beggiatoa alba B18LD RepID=I3CJZ7_9GAMM
iron ABC transporter, permease protein; K02011 iron(III) transport system permease protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
iron ABC transporter permease
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_9163_30
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29836..30930
DNA (1095bp) protein (365aa)
glycine cleavage system aminomethyltransferase T; K00605 aminomethyltransferase [EC:2.1.2.10] Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
Aminomethyltransferase n=1 Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=GCST_THISH
glycine cleavage system aminomethyltransferase T
Displaying items 1-30 of 43 in total

View Taxonomy