ggKbase home page

RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_4550

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_4550_1
R_Gamma2_65_16, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..188)
DNA (186bp) protein (62aa)
Uncharacterized protein Tax=RIFCSPHIGHO2_01_FULL_Gamma2_65_16_curated
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_4550_2
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

287..1693
DNA (1407bp) protein (469aa)
aspA; aspartate ammonia-lyase (EC:4.2.1.2); K01744 aspartate ammonia-lyase [EC:4.3.1.1] Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
aspA; aspartate ammonia-lyase (EC:4.2.1.2)
Aspartate ammonia-lyase id=1368050 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_4550_3
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1825..3456
DNA (1632bp) protein (544aa)
Uncharacterized protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AJG8_9PROT
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
hypothetical protein
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_4550_4
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3479..4333)
DNA (855bp) protein (285aa)
membrane protein n=1 Tax=Legionella shakespearei RepID=UPI000378A540
ribonuclease BN; K07058 membrane protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
ribonuclease BN
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_4550_5
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4605..5339)
DNA (735bp) protein (245aa)
DNA replication initiation factor n=1 Tax=Halomonas sp. PBN3 RepID=U7P6L5_9GAMM
DNA replication initiation factor Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
DNA replication initiation factor
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_4550_6
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5336..6421)
DNA (1086bp) protein (362aa)
Uncharacterized protein n=1 Tax=Pseudomonas alcaligenes NBRC 14159 RepID=U3B6T3_PSEAC
transporter Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
transporter
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_4550_7
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6411..6980)
DNA (570bp) protein (190aa)
CDP-alcohol phosphatidyltransferase (EC:2.7.8.5); K00995 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5] Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
CDP-alcohol phosphatidyltransferase (EC:2.7.8.5)
CDP-alcohol phosphatidyltransferase n=2 Tax=Nitrosococcus oceani RepID=Q3JBV8_NITOC
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_4550_8
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7304..8347
DNA (1044bp) protein (348aa)
phosphoribosylformylglycinamidine cyclo-ligase (EC:6.3.3.1); K01933 phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1] Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
purM; phosphoribosylaminoimidazole synthetase (EC:6.3.3.1)
Phosphoribosylformylglycinamidine cyclo-ligase n=1 Tax=Hahella chejuensis (strain KCTC 2396) RepID=PUR5_HAHCH
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_4550_9
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8457..9155
DNA (699bp) protein (233aa)
phosphoribosylglycinamide formyltransferase; K11175 phosphoribosylglycinamide formyltransferase 1 [EC:2.1.2.2] Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
hypothetical protein n=1 Tax=Pseudomonas thermotolerans RepID=UPI00036167B2
phosphoribosylglycinamide formyltransferase
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_4550_10
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9263..9814
DNA (552bp) protein (184aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6B5D1_9PROT
RNA polymerase, sigma-24 subunit, ECF subfamily Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
RNA polymerase, sigma-24 subunit, ECF subfamily
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_4550_11
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9811..10527
DNA (717bp) protein (239aa)
Uncharacterized protein n=1 Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=B8GLQ7_THISH
hypothetical protein; K09004 hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
hypothetical protein
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_4550_12
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10564..11004
DNA (441bp) protein (147aa)
hypothetical protein n=1 Tax=Thioalkalivibrio sp. ALMg11 RepID=UPI00037437C5
hypothetical protein; K09004 hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
hypothetical protein
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_4550_13
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11133..12515
DNA (1383bp) protein (461aa)
MscS Mechanosensitive ion channel n=1 Tax=Desulfurivibrio alkaliphilus (strain DSM 19089 / UNIQEM U267 / AHT2) RepID=D6Z182_DESAT
MscS Mechanosensitive ion channel Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
MscS Mechanosensitive ion channel
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_4550_14
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12406..12846)
DNA (441bp) protein (147aa)
ADP-ribose pyrophosphatase n=1 Tax=Thiorhodovibrio sp. 970 RepID=H8YYV4_9GAMM
ADP-ribose pyrophosphatase Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
NUDIX hydrolase
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_4550_15
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12963..14153
DNA (1191bp) protein (397aa)
fatty acid desaturase; K00507 stearoyl-CoA desaturase (delta-9 desaturase) [EC:1.14.19.1] Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
Fatty acid desaturase n=1 Tax=Pseudogulbenkiania ferrooxidans 2002 RepID=B9Z6Z8_9NEIS
fatty acid desaturase
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_4550_16
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14221..14775)
DNA (555bp) protein (185aa)
HNH endonuclease domain-containing protein n=1 Tax=Ectothiorhodospira sp. PHS-1 RepID=H1G791_9GAMM
HNH endonuclease Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
HNH endonuclease
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_4550_17
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(15005..15172)
DNA (168bp) protein (56aa)
50S ribosomal protein L33 n=1 Tax=Marinobacterium stanieri RepID=UPI0002559646
rpmG; 50S ribosomal protein L33; K02913 large subunit ribosomal protein L33 Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
rpmg; Rpmg
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_4550_18
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(15174..15410)
DNA (237bp) protein (79aa)
50S ribosomal protein L28 n=1 Tax=Xanthomonas albilineans (strain GPE PC73 / CFBP 7063) RepID=D2U8Q7_XANAP
rpmB; 50S ribosomal protein L28; K02902 large subunit ribosomal protein L28 Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
rpmB; 50S ribosomal protein L28
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_4550_19
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15700..16404)
DNA (705bp) protein (235aa)
UPF0758 protein Noc_0236 n=2 Tax=Nitrosococcus oceani RepID=Y236_NITOC
radC; DNA repair protein RadC; K03630 DNA repair protein RadC Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
radC; DNA repair protein RadC
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_4550_20
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16458..17798
DNA (1341bp) protein (447aa)
phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase (EC:4.1.1.36 6.3.2.5); K13038 phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase [EC:4.1.1.3
phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase (EC:4.1.1.36 6.3.2.5)
phosphopantothenoylcysteine decarboxylase n=1 Tax=Methylohalobius crimeensis RepID=UPI0003B77033
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_4550_21
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17798..18253
DNA (456bp) protein (152aa)
dut; deoxyuridine 5'-triphosphate nucleotidohydrolase (EC:3.6.1.23); K01520 dUTP pyrophosphatase [EC:3.6.1.23] Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
dut; deoxyuridine 5'-triphosphate nucleotidohydrolase (EC:3.6.1.23)
deoxyuridine 5''''-triphosphate nucleotidohydrolase n=1 Tax=Vibrio breoganii RepID=UPI0002F72999
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_4550_22
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18412..19932
DNA (1521bp) protein (507aa)
diguanylate cyclase Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
Putative diguanylate cyclase (GGDEF domain) id=1329468 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
diguanylate cyclase
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_4550_23
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20081..21091
DNA (1011bp) protein (337aa)
phosphoglucomutase; K15778 phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
phosphomannomutase (EC:5.4.2.8); K15778 phosphomannomutase / phosphoglucomutase [EC:5.4.2.8 5.4.2.2] id=12494561 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
phosphoglucomutase
Displaying 23 items

View Taxonomy