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RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_16235

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_16235_1
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

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2..379
DNA (378bp) protein (126aa)
arginine decarboxylase; K01585 arginine decarboxylase [EC:4.1.1.19] Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
Biosynthetic arginine decarboxylase n=1 Tax=uncultured bacterium RepID=K2C0T7_9BACT
arginine decarboxylase
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_16235_2
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(554..1054)
DNA (501bp) protein (167aa)
Type II site-specific deoxyribonuclease (EC:3.1.21.4); K01155 type II restriction enzyme [EC:3.1.21.4] Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
Type II site-specific deoxyribonuclease (EC:3.1.21.4)
Uncharacterized protein n=1 Tax=Pseudomonas sp. HPB0071 RepID=N2IY79_9PSED
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_16235_3
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1163..2056)
DNA (894bp) protein (298aa)
Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_16235_4
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2226..2798)
DNA (573bp) protein (191aa)
Sporulation related protein n=1 Tax=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) RepID=Q1GXV0_METFK
sporulation related Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
sporulation related
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_16235_5
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(2913..4763)
DNA (1851bp) protein (617aa)
argS; arginyl-tRNA synthetase (EC:6.1.1.19); K01887 arginyl-tRNA synthetase [EC:6.1.1.19] Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
argS; arginyl-tRNA synthetase (EC:6.1.1.19)
Arginine--tRNA ligase n=1 Tax=endosymbiont of unidentified scaly snail isolate Monju RepID=S6BV66_9GAMM
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_16235_6
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4914..5570)
DNA (657bp) protein (219aa)
Uncharacterized protein n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BQU2_9GAMM
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
hypothetical protein
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_16235_7
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5570..8017)
DNA (2448bp) protein (816aa)
penicillin-binding protein, 1A family; K05366 penicillin-binding protein 1A [EC:2.4.1.- 3.4.-.-] Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
Penicillin-binding protein, 1A family n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5C3J7_NITHN
penicillin-binding protein, 1A family
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_16235_8
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8292..9368
DNA (1077bp) protein (359aa)
Type IV pilus biogenesis protein PilM n=1 Tax=endosymbiont of Riftia pachyptila (vent Ph05) RepID=G2D924_9GAMM
type IV pilus assembly protein PilM; K02662 type IV pilus assembly protein PilM Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
type IV pilus assembly protein PilM
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_16235_9
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9365..9940
DNA (576bp) protein (192aa)
Fimbrial assembly family protein n=1 Tax=Thiorhodospira sibirica ATCC 700588 RepID=G4E3K9_9GAMM
fimbrial assembly family protein; K02663 type IV pilus assembly protein PilN Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
fimbrial assembly family protein
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_16235_10
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9937..10563
DNA (627bp) protein (209aa)
Pilus assembly protein, PilO n=1 Tax=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) RepID=Q1GYG3_METFK
pilus assembly protein, PilO; K02664 type IV pilus assembly protein PilO Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
pilus assembly protein, PilO
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_16235_11
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10566..11084
DNA (519bp) protein (173aa)
Pilus assembly protein PilP n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6ADV1_9PROT
pilus assembly protein PilP Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
type IV pilus assembly protein PilP
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_16235_12
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11110..13782
DNA (2673bp) protein (891aa)
secretin n=1 Tax=Methylotenera RepID=UPI0003606FC1
Type IV pilus biogenesis protein PilQ; K02666 type IV pilus assembly protein PilQ Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
type IV pilus biogenesis protein PilQ
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_16235_13
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13863..14405
DNA (543bp) protein (181aa)
Shikimate kinase n=3 Tax=Acinetobacter RepID=N8TVR7_9GAMM
shikimate kinase Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
shikimate kinase
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_16235_14
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14386..15471
DNA (1086bp) protein (362aa)
DHQS; 3-dehydroquinate synthase (EC:4.2.3.4 4.2.3.10); K01735 3-dehydroquinate synthase [EC:4.2.3.4] Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
aroB; 3-dehydroquinate synthase (EC:4.2.3.4)
3-dehydroquinate synthase n=1 Tax=Chlamydomonas reinhardtii RepID=A8J463_CHLRE
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_16235_15
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15768..16895
DNA (1128bp) protein (376aa)
dgt; deoxyguanosinetriphosphate triphosphohydrolase-like protein (EC:3.1.5.1) Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
dgt; deoxyguanosinetriphosphate triphosphohydrolase-like protein (EC:3.1.5.1)
deoxyguanosinetriphosphate triphosphohydrolase n=1 Tax=Rhodocyclaceae bacterium RZ94 RepID=UPI00037F4957
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_16235_16
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17165..21715
DNA (4551bp) protein (1517aa)
gltB; glutamate synthase [NADPH] large chain (EC:1.4.1.13) Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
gltB; glutamate synthase [NADPH] large chain (EC:1.4.1.13)
Glutamate synthase [NADPH] large chain (NADPH-GOGAT) n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MM42_9BACT
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_16235_17
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21708..23153
DNA (1446bp) protein (482aa)
gltD; glutamate synthase [NADPH] small chain (EC:1.4.1.13) Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
gltD; glutamate synthase [NADPH] small chain (EC:1.4.1.13)
Glutamate synthase [NADPH] small chain, (NADPH-GOGAT) id=4847530 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_16235_18
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23325..24392
DNA (1068bp) protein (356aa)
uroporphyrinogen decarboxylase (EC:4.1.1.37); K01599 uroporphyrinogen decarboxylase [EC:4.1.1.37] Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
uroporphyrinogen decarboxylase (EC:4.1.1.37)
Uroporphyrinogen decarboxylase n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5C3B8_NITHN
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_16235_19
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24398..24817
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=uncultured Thiohalocapsa sp. PB-PSB1 RepID=V4J4A5_9GAMM
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
hypothetical protein
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_16235_20
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25090..26049
DNA (960bp) protein (320aa)
diguanylate cyclase n=1 Tax=Methylohalobius crimeensis RepID=UPI0003B351E9
diguanylate cyclase; K13590 diguanylate cyclase Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
diguanylate cyclase
Displaying 20 items

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