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RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_2250

Search features with annotation key words

Displaying items 1-30 of 69 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_2250_1
unknown

Not on your lists

137..343
DNA (207bp) protein (69aa)

This feature has no annotations

RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_2250_2
Leptospirillum sp. Group II '5-way CG', Leptospirillum, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(726..1457)
DNA (732bp) protein (244aa)
type II site-specific deoxyribonuclease (EC:3.1.21.4) id=12496841 bin=THIO_MID species=Leptospirillum sp. Group II '5-way CG' genus=Leptospirillum taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=THIO_MID organism_group=Betaproteobacteria
type II site-specific deoxyribonuclease (EC:3.1.21.4)
Type II restriction endonuclease {ECO:0000313|EMBL:EDZ39052.1}; TaxID=419541 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Leptospirillum.;" source="Leptospirillum sp. Group II '5-way
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_2250_3
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1479..2492)
DNA (1014bp) protein (338aa)
methyltransferase n=1 Tax=Lamprocystis purpurea RepID=UPI0003708C8B
DNA methylase N-4/N-6 domain-containing protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
DNA methylase N-4/N-6 domain-containing protein
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_2250_4
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2588..3613)
DNA (1026bp) protein (342aa)
membrane protein n=1 Tax=Perlucidibaca piscinae RepID=UPI0003B42159
integral membrane protein terc; K05794 tellurite resistance protein TerC Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
integral membrane protein terc
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_2250_5
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3769..4278)
DNA (510bp) protein (170aa)
Conserved uncharacterized protein n=1 Tax=Desulfobacula toluolica (strain DSM 7467 / Tol2) RepID=K0NMF1_DESTT
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
hypothetical protein
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_2250_6
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4510..5307)
DNA (798bp) protein (266aa)
Putative uncharacterized protein n=1 Tax=Methylophaga thiooxydans DMS010 RepID=C0N6G6_9GAMM
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
hypothetical protein
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_2250_7
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5546..5869)
DNA (324bp) protein (108aa)
Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_2250_8
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5927..6877)
DNA (951bp) protein (317aa)
CbbX protein n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5C1B9_NITHN
CbbX protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
CbbX protein
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_2250_9
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6959..7393)
DNA (435bp) protein (145aa)
ribulose-bisphosphate carboxylase (EC:4.1.1.39); K01602 ribulose-bisphosphate carboxylase small chain [EC:4.1.1.39] Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
ribulose-bisphosphate carboxylase (EC:4.1.1.39)
ribulose bisphosphate carboxylase small chain n=1 Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI0003723277
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_2250_10
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7412..8899)
DNA (1488bp) protein (496aa)
ribulose-bisphosphate carboxylase (EC:4.1.1.39); K01601 ribulose-bisphosphate carboxylase large chain [EC:4.1.1.39] Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
ribulose-bisphosphate carboxylase (EC:4.1.1.39)
Ribulose bisphosphate carboxylase large chain n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5C1B7_NITHN
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_2250_11
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9035..9958
DNA (924bp) protein (308aa)
Transcriptional regulator, LysR family n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YB77_NITMU
LysR family transcriptional regulator Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
LysR family transcriptional regulator
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_2250_12
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10042..10449)
DNA (408bp) protein (136aa)
Hydrolase n=1 Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=B8GP41_THISH
hydrolase Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
hydrolase
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_2250_13
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10466..11059)
DNA (594bp) protein (198aa)
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
Putative uncharacterized protein id=1957529 bin=GWD2_Deltaproteobacteria_55_8 species=uncultured Desulfobacterium sp. genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_2250_14
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11052..11288)
DNA (237bp) protein (79aa)
Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_2250_15
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11907..12149)
DNA (243bp) protein (81aa)
Uncharacterized protein n=1 Tax=Synechococcus sp. (strain ATCC 27167 / PCC 6312) RepID=K9RYR0_SYNP3
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
hypothetical protein
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_2250_16
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12556..13620)
DNA (1065bp) protein (355aa)
Fructose-bisphosphate aldolase, class II, Calvin cycle subtype n=1 Tax=Thiocapsa marina 5811 RepID=F9U817_9GAMM
fructose-bisphosphate aldolase Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
fructose-bisphosphate aldolase
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_2250_17
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13672..15111)
DNA (1440bp) protein (480aa)
pyruvate kinase (EC:2.7.1.40); K00873 pyruvate kinase [EC:2.7.1.40] Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
pyruvate kinase (EC:2.7.1.40)
Pyruvate kinase n=2 Tax=Nitrosococcus oceani RepID=Q3J7E4_NITOC
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_2250_18
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15234..16415)
DNA (1182bp) protein (394aa)
phosphoglycerate kinase (EC:2.7.2.3) Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
phosphoglycerate kinase (EC:2.7.2.3)
Phosphoglycerate kinase n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6ABB9_9PROT
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_2250_19
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16592..17590)
DNA (999bp) protein (333aa)
cbbG; glyceraldehyde-3-phosphate dehydrogenase CbbG (EC:1.2.1.12); K00134 glyceraldehyde 3-phosphate dehydrogenase [EC:1.2.1.12] Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
cbbG; glyceraldehyde-3-phosphate dehydrogenase CbbG (EC:1.2.1.12)
NAD-dependent glyceraldehyde-3-phosphate dehydrogenase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DJD1_9PROT
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_2250_20
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17732..19771)
DNA (2040bp) protein (680aa)
tkt; transketolase; K00615 transketolase [EC:2.2.1.1] Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
transketolase n=1 Tax=Methylomicrobium buryatense RepID=UPI00034CA9B0
tkt; transketolase
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_2250_21
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20066..20884)
DNA (819bp) protein (273aa)
inositol monophosphatase; K01092 myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25] Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
inositol monophosphatase n=1 Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI00036CDA80
inositol monophosphatase
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_2250_22
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20881..21294)
DNA (414bp) protein (138aa)
Uncharacterized protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6B5M9_9PROT
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
hypothetical protein
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_2250_23
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21396..21956)
DNA (561bp) protein (187aa)
AhpC/TSA family related to alkyl hydroperoxide reductase and thiol specific antioxidant n=2 Tax=sulfur-oxidizing symbionts RepID=G2DGK2_9GAMM
peroxiredoxin Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
peroxiredoxin
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_2250_24
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22122..23483
DNA (1362bp) protein (454aa)
adenosylmethionine-8-amino-7-oxononanoate aminotransferase; K00833 adenosylmethionine-8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62] Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
adenosylmethionine-8-amino-7-oxononanoate aminotransferase n=1 Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI0003645177
adenosylmethionine-8-amino-7-oxononanoate aminotransferase
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_2250_25
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23558..24019)
DNA (462bp) protein (154aa)
chemotaxis protein CheW n=1 Tax=Dyella japonica RepID=UPI0002DF84B3
CheW domain-containing protein; K06598 chemosensory pili system protein ChpC Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
putative chemosensory signal transduction system protein ChpC
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_2250_26
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24019..24462)
DNA (444bp) protein (148aa)
Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_2250_27
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24491..30040)
DNA (5550bp) protein (1850aa)
CheA signal transduction histidine kinase n=1 Tax=Ectothiorhodospira sp. PHS-1 RepID=H1G1W4_9GAMM
CheA signal transduction histidine kinase; K02487 type IV pili sensor histidine kinase and response regulator; K06596 chemosensory pili system protein ChpA (sensor histidine kinase/response regulator)
histidine kinase
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_2250_28
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30037..32262)
DNA (2226bp) protein (742aa)
Twitching motility protein PilJ n=1 Tax=endosymbiont of Riftia pachyptila (vent Ph05) RepID=G2DEH8_9GAMM
methyl-accepting chemotaxis protein; K02660 twitching motility protein PilJ Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
methyl-accepting chemotaxis protein
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_2250_29
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32346..32888)
DNA (543bp) protein (181aa)
protein PilI n=1 Tax=Pseudomonas sp. 313 RepID=UPI000310D441
pilI; type IV pili signal transduction protein PilI; K02659 twitching motility protein PilI Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
chemotaxis signal transduction protein
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_2250_30
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33016..33378)
DNA (363bp) protein (121aa)
Pilus protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6APB2_9PROT
pilH; pilus protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
pilH; pilus protein
Displaying items 1-30 of 69 in total

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