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RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_2501

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_2501_1
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(2..184)
DNA (183bp) protein (61aa)
Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_2501_2
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(205..444)
DNA (240bp) protein (80aa)
Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_2501_3
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(558..911)
DNA (354bp) protein (118aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2CDE0_9BACT
excinuclease ABC subunit C; K07461 putative endonuclease Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
excinuclease ABC subunit C
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_2501_4
GWA2_OD1_47_12, Parcubacteria, Bacteria

Not on your lists

comp(920..1564)
DNA (645bp) protein (215aa)
Phosphoribosyltransferase {ECO:0000313|EMBL:KKU58440.1}; TaxID=1618841 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_47_12.;"
competence protein F; K02242 competence protein ComFC id=5803087 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
phosphoribosyltransferase
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_2501_5
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

1675..2751
DNA (1077bp) protein (359aa)
pilM; putative type IV pilus assembly protein PilM; K02662 type IV pilus assembly protein PilM Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
Type IV pilus assembly protein PilM; K02662 type IV pilus assembly protein PilM id=5803086 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
pilM; putative type IV pilus assembly protein PilM
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_2501_6
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

2797..3543
DNA (747bp) protein (249aa)
Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_2501_7
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

3553..4134
DNA (582bp) protein (194aa)
Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_2501_8
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

4137..4643
DNA (507bp) protein (169aa)
Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_2501_9
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

4651..6354
DNA (1704bp) protein (568aa)
putative type II secretion system protein E Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
general secretion pathway protein E id=5803081 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
type II secretion system protein E
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_2501_10
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

6364..9303
DNA (2940bp) protein (980aa)
Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_2501_11
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

9329..10666
DNA (1338bp) protein (446aa)
hypothetical protein
hypothetical protein Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_2501_12
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

10740..11126
DNA (387bp) protein (129aa)
response regulator receiver protein; K03413 two-component system, chemotaxis family, response regulator CheY Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
two component transcriptional regulator; K02483 two-component system, OmpR family, response regulator id=5803080 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
Two component transcriptional regulator, winged helix
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_2501_13
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

11129..12196
DNA (1068bp) protein (356aa)
pilT; twitching motility protein Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
twitching motility protein; K02669 twitching motility protein PilT id=5803079 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
twitching motility protein
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_2501_14
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

12220..13428
DNA (1209bp) protein (403aa)
type II secretion system protein; K02653 type IV pilus assembly protein PilC Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
Type II secretion system F domain; K02653 type IV pilus assembly protein PilC id=5803078 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
type II secretion system protein
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_2501_15
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

13531..14016
DNA (486bp) protein (162aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI00037A71CB
hypothetical protein Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_2501_16
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

14000..14782
DNA (783bp) protein (261aa)
prepilin peptidase (EC:3.4.23.43); K02654 leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
prepilin peptidase (EC:3.4.23.43)
Prepilin peptidase-1 id=5227292 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_2501_17
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

14775..15422
DNA (648bp) protein (216aa)
transmembrane_regions Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
transmembrane_regions id=5227291 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_2501_18
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

15429..15962
DNA (534bp) protein (178aa)
seg Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
seg id=5803074 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_2501_19
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

15968..16513
DNA (546bp) protein (182aa)
seg Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
seg id=5803073 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_2501_20
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

16503..16997
DNA (495bp) protein (165aa)
seg Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
seg id=5803072 bin=OD1_GWC2_34_28 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_2501_21
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

17001..19019
DNA (2019bp) protein (673aa)
ligA; NAD-dependent DNA ligase LigA; K01972 DNA ligase (NAD+) [EC:6.5.1.2] Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
DNA ligase; K01972 DNA ligase (NAD+) [EC:6.5.1.2] id=5803071 bin=OD1_GWC2_34_28 species=ACD11 genus=ACD11 taxon_order=ACD11 taxon_class=ACD11 phylum=OD1-i tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
ligA; NAD-dependent DNA ligase LigA
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_2501_22
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

19040..19321
DNA (282bp) protein (94aa)
gatC; aspartyl/glutamyl-tRNA amidotransferase subunit C (EC:6.3.5.7); K02435 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_
glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase subunit C; K02435 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7] id=5803069 bin=OD1_GWC2_34_28 species=Owenweeksia hongkongensis genus=Owenweeksia taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
gatC; aspartyl/glutamyl-tRNA amidotransferase subunit C (EC:6.3.5.7)
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_2501_23
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

19318..20748
DNA (1431bp) protein (477aa)
glutamyl-tRNA(Gln) amidotransferase subunit A; K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
glutamyl-tRNA(Gln) amidotransferase subunit A; K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] id=5803067 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
glutamyl-tRNA(Gln) amidotransferase subunit A
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_2501_24
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

20839..21438
DNA (600bp) protein (200aa)
transmembrane_regions Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
transmembrane_regions id=5803066 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_2501_25
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(21664..22047)
DNA (384bp) protein (128aa)
Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_2501_26
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

22569..23348
DNA (780bp) protein (260aa)
Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_2501_27
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

23355..23723
DNA (369bp) protein (123aa)
Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_2501_28
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

23858..28192
DNA (4335bp) protein (1445aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI00035DB08D
putative histidine secretory acid phosphatase Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
Displaying 28 items

View Taxonomy