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RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_5119

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_5119_1
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(1..3399)
DNA (3399bp) protein (1133aa)
DNA-directed RNA polymerase subunit beta'; K03046 DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
DNA-directed RNA polymerase subunit beta'; K03046 DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] id=5803388 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
DNA-directed RNA polymerase subunit beta'
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_5119_2
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(3465..6701)
DNA (3237bp) protein (1079aa)
rpoB; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6); K03043 DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
rpoB; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PZL8_9BACT
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_5119_3
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(7450..7851)
DNA (402bp) protein (134aa)
Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_5119_4
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(8048..8716)
DNA (669bp) protein (223aa)
trmD; tRNA (guanine-1-)-methyltransferase (EC:2.1.1.31); K00554 tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
trmD; tRNA (guanine-n(1)-)-methyltransferase (EC:2.1.1.31); K00554 tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] id=5803366 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
trmD; tRNA (guanine-1-)-methyltransferase (EC:2.1.1.31)
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_5119_5
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(8773..9090)
DNA (318bp) protein (106aa)
Uncharacterized protein n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PVH6_9BACT
hypothetical protein Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_5119_6
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists


comp(9178..9525)
DNA (348bp) protein (116aa)
30S ribosomal protein S16; K02959 small subunit ribosomal protein S16 Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
30S ribosomal protein S16; K02959 small subunit ribosomal protein S16 id=5803385 bin=OD1_GWC2_34_28 species=GWE2_OD1_46_68 genus=GWE2_OD1_46_68 taxon_order=GWE2_OD1_46_68 taxon_class=GWE2_OD1_46_68 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
rpsP; 30S ribosomal protein S16
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_5119_7
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(9617..10279)
DNA (663bp) protein (221aa)
Uncharacterized protein n=1 Tax=Rhizophagus irregularis (strain DAOM 181602 / DAOM 197198 / MUCL 43194) RepID=U9TPR0_RHIID
Hdhd1; haloacid dehalogenase-like hydrolase domain containing 1 Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
HAD family hydrolase
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_5119_8
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

10401..12338
DNA (1938bp) protein (646aa)
ribonuclease R; K12573 ribonuclease R [EC:3.1.-.-] Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
Ribonuclease R id=3012811 bin=GWC1_OD1_38_17 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
ribonuclease R
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_5119_9
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(12455..12841)
DNA (387bp) protein (129aa)
hypothetical protein Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase id=2692328 bin=GWF2_OP9_related_35_9 species=RAAC1_SR1 genus=RAAC1_SR1 taxon_order=RAAC1_SR1 taxon_class=RAAC1_SR1 phylum=SR1 tax=GWF2_OP9_related_35_9 organism_group=OP9 (Atribacteria)
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_5119_10
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

12905..15106
DNA (2202bp) protein (734aa)
topA; DNA topoisomerase i; K03168 DNA topoisomerase I [EC:5.99.1.2] Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
DNA topoisomerase 1 n=1 Tax=uncultured bacterium CSLC2 RepID=G4WVT3_9BACT
topA; DNA topoisomerase i
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_5119_11
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(15116..15403)
DNA (288bp) protein (96aa)
type II DNA modification methylase Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
DNA methylase N-4/N-6 domain protein id=2076573 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
type II DNA modification methylase
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_5119_12
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(15473..16231)
DNA (759bp) protein (253aa)
DNA methylase N-4/N-6 domain-containing protein Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
DNA methylase N-4/N-6 domain protein id=2076573 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
DNA methylase N-4/N-6 domain-containing protein
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_5119_13
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(16384..16629)
DNA (246bp) protein (82aa)
Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_5119_14
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(16645..17268)
DNA (624bp) protein (208aa)
peptidyl-prolyl isomerase (EC:5.2.1.8); K03768 peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8] Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
peptidyl-prolyl isomerase (EC:5.2.1.8)
Peptidyl-prolyl cis-trans isomerase id=3506534 bin=GWC1_OD1_38_17 species=ACD11 genus=ACD11 taxon_order=ACD11 taxon_class=ACD11 phylum=OD1-i tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_5119_15
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(17291..19033)
DNA (1743bp) protein (581aa)
DNA primase; K02316 DNA primase [EC:2.7.7.-] Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
dnaG; DNA primase; K02316 DNA primase [EC:2.7.7.-] id=5803389 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
DNA primase
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_5119_16
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

19115..20458
DNA (1344bp) protein (448aa)
DnaB; replicative DNA helicase; K02314 replicative DNA helicase [EC:3.6.4.12] Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
replicative DNA helicase; K02314 replicative DNA helicase [EC:3.6.4.12] id=5803503 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
DnaB; replicative DNA helicase
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_5119_17
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

20460..21071
DNA (612bp) protein (204aa)
Recombination protein RecR n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PVX0_9BACT
recombination protein RecR; K06187 recombination protein RecR Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
recR; recombination protein RecR
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_5119_18
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists


comp(21055..21372)
DNA (318bp) protein (106aa)
rplU; 50S ribosomal protein L21; K02888 large subunit ribosomal protein L21 Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
LSU ribosomal protein L21P; K02888 large subunit ribosomal protein L21 id=5803470 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
rplU; 50S ribosomal protein L21
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_5119_19
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(21762..22826)
DNA (1065bp) protein (355aa)
hypothetical protein Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
hypothetical protein id=5801239 bin=GWE2_OD1_42_8 species=GW2011_OD1_1 genus=GW2011_OD1_1 taxon_order=GW2011_OD1_1 taxon_class=GW2011_OD1_1 phylum=OD1 tax=GWE2_OD1_42_8 organism_group=OD1 (Parcubacteria) organism_desc=GW2011_OD1_1 GW2011_A
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_5119_20
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

22850..23305
DNA (456bp) protein (152aa)
hypothetical protein; K09117 hypothetical protein Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
GatB/YqeY domain-containing protein; K09117 hypothetical protein id=5803496 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_5119_21
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(23693..24940)
DNA (1248bp) protein (416aa)
UDP-N-acetylmuramyl-tripeptide synthetase (EC:6.3.2.13); K01928 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
UDP-N-acetylmuramyl-tripeptide synthetase (EC:6.3.2.13)
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase id=3305457 bin=GWA2_CPR4_42_17 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWA2_CPR4_42_17 organism_group=CPR4 organism_desc=from megabin
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_5119_22
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

25021..26886
DNA (1866bp) protein (622aa)
PspGI methylase n=1 Tax=Pyrococcus sp. GI-H RepID=O93645_9EURY
adenine-specific DNA methylase Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
adenine-specific DNA methylase
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_5119_23
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(27317..28564)
DNA (1248bp) protein (416aa)
alanine racemase; K01775 alanine racemase [EC:5.1.1.1] Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase; K01929 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] id=5803436 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
alanine racemase
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_5119_24
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(28561..28734)
DNA (174bp) protein (58aa)
parallel beta-helix repeat-containing protein Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
parallel beta-helix repeat-containing protein id=5803309 bin=OD1_GWC2_34_28 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
Displaying 24 items

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