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RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_207637

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_207637_1
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2..1621
DNA (1620bp) protein (540aa)
ABC transporter-like protein; K06158 ATP-binding cassette, subfamily F, member 3 Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
ABC transporter-like protein; K06158 ATP-binding cassette, subfamily F, member 3 id=5081691 bin=GWF1_Burkholderiales_GWF1_66_17 species=Polaromonas sp. CF318 genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
ABC transporter-like protein
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_207637_2
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1781..2029
DNA (249bp) protein (83aa)
transglycosylase-associated protein Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
Transglycosylase-associated protein id=1279197 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
transglycosylase-associated protein
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_207637_3
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2148..2387
DNA (240bp) protein (80aa)
hypothetical protein Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
Uncharacterized protein id=1287125 bin=GWE1_Burkholderiales_65_30 species=Polaromonas sp. CF318 genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
hypothetical protein
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_207637_trna_1
unknown

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comp(2465..2537)
DNA (73bp)
transferRNA
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_207637_4
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2583..3404)
DNA (822bp) protein (274aa)
uba/thif-type nad/fad binding protein Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
UBA/THIF-type NAD/FAD binding fold protein id=1279201 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
uba/thif-type nad/fad binding protein
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_207637_5
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3411..4532)
DNA (1122bp) protein (374aa)
hypothetical protein; K07112 Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
Uncharacterized protein id=1279202 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
predicted transporter component
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_207637_6
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4597..5364)
DNA (768bp) protein (256aa)
hypothetical protein Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
hypothetical protein id=5081698 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
hypothetical protein
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_207637_7
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5370..5954)
DNA (585bp) protein (195aa)
pal; peptidoglycan-associated lipoprotein; K03640 peptidoglycan-associated lipoprotein Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
pal; peptidoglycan-associated lipoprotein; K03640 peptidoglycan-associated lipoprotein id=5081699 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
pal; peptidoglycan-associated lipoprotein
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_207637_8
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6020..7285)
DNA (1266bp) protein (422aa)
tolB; translocation protein TolB Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
tolB; translocation protein TolB; K03641 TolB protein id=5081700 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
tolB; translocation protein TolB
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_207637_9
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7529..9130
DNA (1602bp) protein (534aa)
lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; K11085 ATP-binding cassette, subfamily B, bacterial MsbA [EC:3.6.3.-] Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
lipid a ABC exporter, fused ATPase and inner membrane subunits msba; K11085 ATP-binding cassette, subfamily B, bacterial MsbA [EC:3.6.3.-] id=5081701 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
ABC-type multidrug transport system, ATPase and permease component
Displaying 10 items

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