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RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_24891

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_24891_1
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2..439
DNA (438bp) protein (146aa)
homoprotocatechuate degradation operon regulator hpar Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
MarR family transcriptional regulator id=1287104 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
homoprotocatechuate degradation operon regulator hpar
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_24891_2
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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450..1112
DNA (663bp) protein (221aa)
fumarylacetoacetate (FAA) hydrolase; K05921 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase / 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase [EC:4.1.1.68 5.3.3.-] Tax=RifCSPlowO2_12_Burkholderiales_
Fumarylacetoacetate (Faa) hydrolase id=1287103 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
fumarylacetoacetate (FAA) hydrolase
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_24891_3
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1109..1903
DNA (795bp) protein (265aa)
4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase subunit HpaG2 (EC:5.3.3.10); K05921 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase / 2-hydroxyhepta-2,4-diene-1,7-dioate iso
4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase subunit HpaG2 (EC:5.3.3.10); K05921 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase / 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase [EC:4.1.1.68 5.3.3.-] id=5083379 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for R
4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase subunit HpaG2 (EC:5.3.3.10)
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_24891_4
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1978..3510
DNA (1533bp) protein (511aa)
5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase (EC:1.2.1.-) Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase (EC:1.2.1.-)
HpaE protein id=1287101 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_24891_5
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3850..4776
DNA (927bp) protein (309aa)
3,4-dihydroxyphenylacetate 2,3-dioxygenase Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
3,4-dihydroxyphenylacetate 2,3-dioxygenase id=1287100 bin=GWE1_Burkholderiales_65_30 species=Burkholderiales bacterium JOSHI_001 genus=unknown taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
3,4-dihydroxyphenylacetate 2,3-dioxygenase
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_24891_6
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4791..5243
DNA (453bp) protein (151aa)
5-carboxymethyl-2-hydroxymuconate isomerase; K01826 5-carboxymethyl-2-hydroxymuconate isomerase [EC:5.3.3.10] Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
HpaF protein id=1287099 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
5-carboxymethyl-2-hydroxymuconate isomerase
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_24891_7
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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5250..6077
DNA (828bp) protein (276aa)
2-oxo-hepta-3-ene-1,7-dioic acid hydratase (EC:4.1.1.77); K02509 2-oxo-hept-3-ene-1,7-dioate hydratase [EC:4.2.1.-] Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
hpcG1; 2-oxo-hepta-3-ene-1,7-dioic acid hydratase (EC:4.2.-.-)
2-oxo-hepta-3-ene-1,7-dioic acid hydratase id=1287098 bin=GWE1_Burkholderiales_65_30 species=unknown genus=Delftia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_24891_8
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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6116..6877
DNA (762bp) protein (254aa)
aldolase II superfamily protein Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
aldolase II superfamily protein id=5083384 bin=GWF1_Burkholderiales_GWF1_66_17 species=Burkholderia cenocepacia genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
aldolase II superfamily protein
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_24891_9
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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6874..7926
DNA (1053bp) protein (351aa)
2-dehydropantoate 2-reductase (EC:1.1.1.169); K00077 2-dehydropantoate 2-reductase [EC:1.1.1.169] Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
2-dehydropantoate 2-reductase (EC:1.1.1.169)
2-dehydropantoate 2-reductase id=1287096 bin=GWE1_Burkholderiales_65_30 species=Leptothrix cholodnii genus=Leptothrix taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_24891_10
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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8001..8807
DNA (807bp) protein (269aa)
hpaI; 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (EC:4.1.2.-) Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
hpaI; 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (EC:4.1.2.-)
2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase id=1287095 bin=GWE1_Burkholderiales_65_30 species=Acidovorax sp. CF316 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_24891_11
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(8821..9156)
DNA (336bp) protein (112aa)
multiple antibiotic resistance (MarC)-like proteins; K05595 multiple antibiotic resistance protein Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
multiple antibiotic resistance (MarC)-like proteins; K05595 multiple antibiotic resistance protein id=5083410 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
multiple antibiotic resistance (MarC)-like proteins
Displaying 11 items

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