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RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_1024

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Displaying items 1-30 of 37 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_1024_1
RLO_Burkholderiales_64_33, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..269)
DNA (267bp) protein (89aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa BL04 RepID=U8MBP3_PSEAI
conjugal transfer trbD transmembrane protein
putative conjugal transfer TrbD transmembrane protein; K03198 type IV secretion system protein VirB3 Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_1024_2
Pseudomonas chlororaphis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(266..682)
DNA (417bp) protein (139aa)
Conjugative transfer protein TrbC n=1 Tax=Ralstonia solanacearum FQY_4 RepID=M4UDD6_RALSL
trbC-like protein
TrbC-like protein {ECO:0000313|EMBL:AKA21949.1}; TaxID=587753 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas chlororaphis
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_1024_3
Xanthomonas campestris, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(679..1701)
DNA (1023bp) protein (341aa)
Type II secretion system protein E n=3 Tax=Gammaproteobacteria RepID=A0KUP7_SHESA
Conjugal transfer protein TrbB {ECO:0000313|EMBL:AKC78174.1}; TaxID=339 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas ca
type II secretion system protein E
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_1024_4
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1752..2252)
DNA (501bp) protein (167aa)
CopG domain-containing protein n=1 Tax=Ralstonia solanacearum FQY_4 RepID=M4UBP6_RALSL
hypothetical protein Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
CopG domain-containing protein
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_1024_5
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2249..4273)
DNA (2025bp) protein (675aa)
TRAG family protein n=2 Tax=Delftia acidovorans RepID=A9BPW7_DELAS
traG; TRAG family protein Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
conjugal transfer coupling protein TraG
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_1024_6
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4519..4788)
DNA (270bp) protein (90aa)
Uncharacterized protein n=2 Tax=Pseudomonas aeruginosa RepID=U8EF20_PSEAI
lipoprotein Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
hypothetical protein
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_1024_7
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4785..5717)
DNA (933bp) protein (311aa)
UPI0003AA26FE related cluster n=1 Tax=unknown RepID=UPI0003AA26FE
LysR family transcriptional regulator Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
LysR family transcriptional regulator
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_1024_8
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6371..7690
DNA (1320bp) protein (440aa)
MarR family transcriptional regulator Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
Rieske (2Fe-2S) domain protein id=1270808 bin=GWE1_Burkholderiales_65_30 species=unknown genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
MarR family transcriptional regulator
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_1024_9
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7727..8689
DNA (963bp) protein (321aa)
4,5-dihydroxyphthalate decarboxylase (EC:4.1.1.55); K04102 4,5-dihydroxyphthalate decarboxylase [EC:4.1.1.55] Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
4,5-dihydroxyphthalate decarboxylase (EC:4.1.1.55); K04102 4,5-dihydroxyphthalate decarboxylase [EC:4.1.1.55] id=5080712 bin=GWF1_Burkholderiales_GWF1_66_17 species=Polaromonas naphthalenivorans genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
4,5-dihydroxyphthalate decarboxylase (EC:4.1.1.55)
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_1024_10
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8741..9148)
DNA (408bp) protein (136aa)
MarR family transcriptional regulator Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
MarR family transcriptional regulator id=5080711 bin=GWF1_Burkholderiales_GWF1_66_17 species=Polaromonas sp. CF318 genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
transcriptional regulator, MarR family
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_1024_11
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9262..10467)
DNA (1206bp) protein (402aa)
4,5-dihydroxyphthalate dehydrogenase (EC:1.3.1.64) Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
4,5-dihydroxyphthalate dehydrogenase (EC:1.3.1.64)
4,5-dihydroxyphthalate dehydrogenase id=1270805 bin=GWE1_Burkholderiales_65_30 species=unknown genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_1024_12
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10476..11420)
DNA (945bp) protein (315aa)
ferredoxin Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
Phthalate dioxygenase reductase id=1270804 bin=GWE1_Burkholderiales_65_30 species=unknown genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
ferredoxin
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_1024_13
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11626..12597
DNA (972bp) protein (324aa)
hypothetical protein Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
Uncharacterized protein UPF0065 id=1270803 bin=GWE1_Burkholderiales_65_30 species=unknown genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
hypothetical protein
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_1024_14
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12621..13346
DNA (726bp) protein (242aa)
hypothetical protein; K07090 Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
Putative uncharacterized protein id=1270802 bin=GWE1_Burkholderiales_65_30 species=unknown genus=Delftia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
hypothetical protein
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_1024_15
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13419..13640)
DNA (222bp) protein (74aa)
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_1024_16
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13887..14735
DNA (849bp) protein (283aa)
nicotinate-nucleotide pyrophosphorylase (EC:2.4.2.19); K00767 nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19] Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
nicotinate-nucleotide pyrophosphorylase (EC:2.4.2.19); K00767 nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19] id=5080705 bin=GWF1_Burkholderiales_GWF1_66_17 species=Polaromonas naphthalenivorans genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
nicotinate-nucleotide pyrophosphorylase (EC:2.4.2.19)
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_1024_17
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15297..16280
DNA (984bp) protein (328aa)
Transposase IS4 family protein n=1 Tax=Delftia sp. (strain Cs1-4) RepID=F6AQA3_DELSC
transposase IS4 family protein; K07481 transposase, IS5 family Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
transposase IS4 family protein
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_1024_18
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17172..17378
DNA (207bp) protein (69aa)
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_1024_19
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17318..17524)
DNA (207bp) protein (69aa)
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_1024_20
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17645..19156)
DNA (1512bp) protein (504aa)
hypothetical protein Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
Putative 52.8 kDa protein in TAR-I ttuC' 3'region id=1270787 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
hypothetical protein
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_1024_21
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19175..19663)
DNA (489bp) protein (163aa)
tctB; small integral membrane protein Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
Putative uncharacterized protein id=1265393 bin=GWE1_Burkholderiales_65_30 species=Polaromonas naphthalenivorans genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
tctB; small integral membrane protein
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_1024_22
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19858..20832)
DNA (975bp) protein (325aa)
Ferredoxin n=1 Tax=Comamonas testosteroni KF-1 RepID=B7WRK5_COMTE
oxidoreductase fad/NAD(P)-binding domain-containing protein Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
ferredoxin
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_1024_23
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20836..21615)
DNA (780bp) protein (260aa)
1,2-dihydroxy-3,5-cyclohexadiene-1,5-dicarboxylate dehydrogenase n=1 Tax=Comamonas sp. E6 RepID=C4TNS4_9BURK
short-chain dehydrogenase/reductase Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
short-chain dehydrogenase
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_1024_24
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21622..22602)
DNA (981bp) protein (327aa)
Uncharacterized protein n=1 Tax=Comamonas testosteroni KF-1 RepID=B7WRK7_COMTE
putative Bug-like extra cytoplasmic solute receptor, TTT family Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
putative Bug-like extra cytoplasmic solute receptor, TTT family
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_1024_25
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22644..23918)
DNA (1275bp) protein (425aa)
Oxygenase component of isophthalate dioxygenase n=1 Tax=Comamonas sp. E6 RepID=C4TNS2_9BURK
Rieske (2Fe-2S) domain-containing protein Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
hypothetical protein
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_1024_26
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24068..24847
DNA (780bp) protein (260aa)
transcriptional regulator, IclR family Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
transcriptional regulator id=5080698 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
hypothetical protein
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_1024_27
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25040..26068)
DNA (1029bp) protein (343aa)
Ferredoxin--NAD(+) reductase; K00523 CDP-4-dehydro-6-deoxyglucose reductase [EC:1.17.1.1] Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
Ferredoxin--NAD(+) reductase; K00523 CDP-4-dehydro-6-deoxyglucose reductase [EC:1.17.1.1] id=5080704 bin=GWF1_Burkholderiales_GWF1_66_17 species=Ramlibacter tataouinensis genus=Ramlibacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
Ferredoxin--NAD(+) reductase
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_1024_28
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26077..26769)
DNA (693bp) protein (231aa)
pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase PdxA (EC:1.1.1.262) Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
pdxA; 4-hydroxythreonine-4-phosphate dehydrogenase PdxA (EC:1.1.1.262)
4-hydroxythreonine-4-phosphate dehydrogenase (4-(Phosphohydroxy)-L-threonine dehydrogenase)-like protein id=1270798 bin=GWE1_Burkholderiales_65_30 species=Ramlibacter tataouinensis genus=Ramlibacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_1024_29
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27030..27506)
DNA (477bp) protein (159aa)
terephthalate 1,2-dioxygenase oxygenase component small subunit; K05709 3-phenylpropionate/cinnamic acid dioxygenase subunit beta [EC:1.14.12.19] Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
terephthalate 1,2-dioxygenase oxygenase component small subunit; K05709 3-phenylpropionate/cinnamic acid dioxygenase subunit beta [EC:1.14.12.19] id=5080702 bin=GWF1_Burkholderiales_GWF1_66_17 species=Pseudomonas sp. Ag1 genus=Pseudomonas taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
terephthalate 1,2-dioxygenase oxygenase component beta chain
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_1024_30
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27518..28756)
DNA (1239bp) protein (413aa)
terephthalate 1,2-dioxygenase oxygenase component large subunit; K05708 3-phenylpropionate/cinnamic acid dioxygenase subunit alpha [EC:1.14.12.19] Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
terephthalate 1,2-dioxygenase oxygenase component large subunit; K05708 3-phenylpropionate/cinnamic acid dioxygenase subunit alpha [EC:1.14.12.19] id=5080701 bin=GWF1_Burkholderiales_GWF1_66_17 species=Ramlibacter tataouinensis genus=Ramlibacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
terephthalate 1,2-dioxygenase oxygenase component large subunit
Displaying items 1-30 of 37 in total

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