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RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_133723

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Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_133723_1
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(78..872)
DNA (795bp) protein (265aa)
lpxA; acyl-ACP-UDP-N-acetylglucosamine O-acyltransferase; K00677 UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XVT2_RAMTT
lpxA; acyl-ACP-UDP-N-acetylglucosamine O-acyltransferase
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_133723_2
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(891..1331)
DNA (441bp) protein (147aa)
fabZ; (3R)-hydroxymyristoyl-ACP dehydratase (EC:4.2.1.-); K02372 3R-hydroxymyristoyl ACP dehydrase [EC:4.2.1.-] Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
fabZ; (3R)-hydroxymyristoyl-ACP dehydratase (EC:4.2.1.-)
3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ n=1 Tax=Polaromonas sp. CF318 RepID=J2U4M0_9BURK
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_133723_3
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1328..2314)
DNA (987bp) protein (329aa)
lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; K02536 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191] Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; K02536 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191] id=5083032 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_133723_4
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2396..2914)
DNA (519bp) protein (173aa)
Candidate Outer membrane protein periplasmic chaperone OmpH n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XVS9_RAMTT
skp; Outer membrane protein periplasmic chaperone OmpH; K06142 outer membrane protein Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
skp; Outer membrane protein periplasmic chaperone OmpH
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_133723_5
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3024..5078)
DNA (2055bp) protein (685aa)
outer membrane protein assembly complex, YaeT protein; K07277 outer membrane protein Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
Outer membrane protein assembly factor BamA id=1266308 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
surface antigen (D15)
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_133723_6
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5092..5616)
DNA (525bp) protein (175aa)
peptidase RseP; K11749 regulator of sigma E protease [EC:3.4.24.-] Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
peptidase RseP; K11749 regulator of sigma E protease [EC:3.4.24.-] id=5083036 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
rseP; putative RIP metalloprotease RseP
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_133723_7
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5583..6497)
DNA (915bp) protein (305aa)
peptidase RseP; K11749 regulator of sigma E protease [EC:3.4.24.-] Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
Membrane-associated zinc metalloprotease id=1266309 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
peptidase RseP
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_133723_8
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(6573..7397)
DNA (825bp) protein (275aa)
1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267); K00099 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267] Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
1-deoxy-D-xylulose 5-phosphate reductoisomerase n=1 Tax=Acidovorax radicis RepID=UPI0002375491
1-deoxy-D-xylulose 5-phosphate reductoisomerase
Displaying 8 items

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