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RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_24821

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_24821_1
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3..341
DNA (339bp) protein (113aa)
Protein GstA n=1 Tax=Pseudomonas protegens CHA0 RepID=R4RF26_9PSED
gstA2; protein GstA Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
gstA2; protein GstA
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_24821_2
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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347..1318
DNA (972bp) protein (324aa)
pyridoxamine 5''''-phosphate oxidase n=1 Tax=Variovorax paradoxus RepID=UPI000381C5B3
putative pyridoxamine 5'-phosphate oxidase, FMN-binding protein Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
putative pyridoxamine 5'-phosphate oxidase, FMN-binding protein
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_24821_3
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1465..2142
DNA (678bp) protein (226aa)
type 11 methyltransferase Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
Methyltransferase type 11 id=1266282 bin=GWE1_Burkholderiales_65_30 species=unknown genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
type 11 methyltransferase
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_24821_4
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2157..2795)
DNA (639bp) protein (213aa)
ccmA; ABC transporter involved in cytochrome c biogenesis, ATPase component (EC:3.6.3.25) Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
ccmA; ABC transporter involved in cytochrome c biogenesis, ATPase component (EC:3.6.3.25) id=5082689 bin=GWF1_Burkholderiales_GWF1_66_17 species=Collimonas fungivorans genus=Collimonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
ccmA; ABC transporter involved in cytochrome c biogenesis
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_24821_5
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2807..3442)
DNA (636bp) protein (212aa)
Putative general secretion pathway protein B n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HME2_RUBGI
putative general secretion pathway protein B; K02451 general secretion pathway protein B Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
putative general secretion pathway protein B
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_24821_6
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3456..5162)
DNA (1707bp) protein (569aa)
peptidoglycan-binding domain-containing protein; K02450 general secretion pathway protein A Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
gspA; general secretion pathway protein A; K02450 general secretion pathway protein A id=5082691 bin=GWF1_Burkholderiales_GWF1_66_17 species=Methylibium petroleiphilum genus=Methylibium taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
peptidoglycan-binding domain-containing protein
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_24821_7
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5256..5882)
DNA (627bp) protein (209aa)
hypothetical protein Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
hypothetical protein id=5082692 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
integral membrane protein CcmA
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_24821_8
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6014..6916)
DNA (903bp) protein (301aa)
Enoyl-CoA hydratase n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TNC2_TISMK
enoyl-CoA hydratase Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
enoyl-CoA hydratase
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_24821_9
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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7011..7844
DNA (834bp) protein (278aa)
LuxR family transcriptional regulator Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
Transcriptional regulator, LuxR family protein id=1269736 bin=GWE1_Burkholderiales_65_30 species=Comamonas testosteroni genus=Comamonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
transcriptional regulator, LuxR family
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_24821_10
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7940..9643
DNA (1704bp) protein (568aa)
monooxygenase FAD-binding; K05712 3-(3-hydroxy-phenyl)propionate hydroxylase [EC:1.14.13.127] Tax=GWE1_Burkholderiales_65_30_curated
monooxygenase FAD-binding; K05712 3-(3-hydroxy-phenyl)propionate hydroxylase [EC:1.14.13.127] id=5082694 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=Delftia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
Salicylate hydroxylase (EC:1.14.13.1)
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_24821_11
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9646..9834
DNA (189bp) protein (63aa)
hypothetical protein Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
Putative uncharacterized protein id=1269734 bin=GWE1_Burkholderiales_65_30 species=unknown genus=Delftia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
MhaB
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_24821_12
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9862..10737)
DNA (876bp) protein (292aa)
AraC family transcriptional regulator n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MP19_9BURK
transcriptional regulator, AraC family Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
transcriptional regulator, AraC family
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_24821_13
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10747..11355)
DNA (609bp) protein (203aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4XL19_SORCE
hypothetical protein Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
hypothetical protein
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_24821_14
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11342..11815)
DNA (474bp) protein (158aa)
Uncharacterized protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MP20_9BURK
Uncharacterized protein Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_24821_15
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11976..14471
DNA (2496bp) protein (832aa)
UPF0313 protein HGR_08094 n=1 Tax=Hylemonella gracilis ATCC 19624 RepID=F3KT38_9BURK
radical SAM domain-containing protein Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
radical SAM domain-containing protein
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_24821_16
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14494..15444)
DNA (951bp) protein (317aa)
L-proline glycine betaine binding ABC transporter protein proX n=1 Tax=Collimonas fungivorans (strain Ter331) RepID=G0AJM5_COLFT
L-proline glycine betaine binding ABC transporter protein proX; K02002 glycine betaine/proline transport system substrate-binding protein Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
L-proline glycine betaine binding ABC transporter protein proX
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_24821_17
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15455..17095)
DNA (1641bp) protein (547aa)
betC; choline-sulfatase; K01133 choline-sulfatase [EC:3.1.6.6] Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
Choline-sulfatase n=1 Tax=Pseudogulbenkiania sp. (strain NH8B) RepID=G2J487_PSEUL
betC; choline-sulfatase
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_24821_18
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17122..18111
DNA (990bp) protein (330aa)
Transcriptional regulator n=1 Tax=Collimonas fungivorans (strain Ter331) RepID=G0AJM3_COLFT
transcriptional regulator Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
transcriptional regulator
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_24821_19
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18306..18872)
DNA (567bp) protein (189aa)
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
RIFCSPLOWO2_12_FULL_Betaproteobacteria_67_210_rifcsplowo2_12_scaffold_24821_20
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19138..19731
DNA (594bp) protein (198aa)
hypothetical protein n=1 Tax=Curvibacter lanceolatus RepID=UPI00037DF8C5
hypothetical protein; K09973 hypothetical protein Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
hypothetical protein
Displaying 20 items

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