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RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_11711

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_11711_1
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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3..179
DNA (177bp) protein (59aa)
adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC:2.6.1.62); K00833 adenosylmethionine-8-amino-7-oxononanoate aminotransferase [EC:2.6.1.62] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC:2.6.1.62)
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase n=1 Tax=Acetohalobium arabaticum (strain ATCC 49924 / DSM 5501 / Z-7288) RepID=D9QSE1_ACEAZ
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_11711_2
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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167..307
DNA (141bp) protein (47aa)
Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_11711_3
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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comp(324..1007)
DNA (684bp) protein (228aa)
hypothetical protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Uncharacterized protein id=3426824 bin=GWF2_Nitrospirae_44_13 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
hypothetical protein
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_11711_4
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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comp(1182..1808)
DNA (627bp) protein (209aa)
pmtA; phosphatidylethanolamine N-methyltransferase (EC:2.1.1.17) Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
pmtA; phosphatidylethanolamine N-methyltransferase (EC:2.1.1.17)
Phosphatidylethanolamine N-methyltransferase id=1871689 bin=GWB2_Proteobacteria_55_19 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWB2_Proteobacteria_55_19 organism_group=Proteobacteria organism_desc=Good
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_11711_trna_1
unknown

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comp(2006..2079)
DNA (74bp)
transferRNA
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_11711_5
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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comp(2125..2364)
DNA (240bp) protein (80aa)
xseB; exodeoxyribonuclease VII small subunit (EC:3.1.11.6); K03602 exodeoxyribonuclease VII small subunit [EC:3.1.11.6] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
xseB; exodeoxyribonuclease VII small subunit (EC:3.1.11.6)
Exodeoxyribonuclease 7 small subunit n=1 Tax=Nitrospina gracilis 3/211 RepID=M1YX15_9BACT
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_11711_6
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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comp(2431..3663)
DNA (1233bp) protein (411aa)
xseA; Exodeoxyribonuclease 7 large subunit (Exodeoxyribonuclease VII large subunit) (Exonuclease VII large subunit) (EC:3.1.11.6) Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
xseA; Exodeoxyribonuclease 7 large subunit (Exodeoxyribonuclease VII large subunit) (Exonuclease VII large subunit) (EC:3.1.11.6)
xseA; Exodeoxyribonuclease 7 large subunit (Exodeoxyribonuclease VII large subunit) (Exonuclease VII large subunit) (EC:3.1.11.6) id=14428676 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_11711_7
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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comp(3650..4516)
DNA (867bp) protein (289aa)
methenyltetrahydrofolate cyclohydrolase/5,10-methylenetetrahydrofolate dehydrogenase (NADP+) (EC:1.5.1.5 3.5.4.9) Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
methenyltetrahydrofolate cyclohydrolase/5,10-methylenetetrahydrofolate dehydrogenase (NADP+) (EC:1.5.1.5 3.5.4.9)
Bifunctional protein FolD n=1 Tax=Firmicutes bacterium CAG:272 RepID=R6TZE5_9FIRM
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_11711_8
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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comp(5262..5414)
DNA (153bp) protein (51aa)
Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_11711_9
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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comp(5682..6233)
DNA (552bp) protein (184aa)
hypothetical protein n=1 Tax=Marinimicrobia bacterium JGI 0000059-L03 RepID=UPI00035C7757
phage integrase family protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
phage integrase family protein
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_11711_10
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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6512..7693
DNA (1182bp) protein (394aa)
three-deoxy-D-manno-octulosonic-acid transferase domain-containing protein; K02527 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15] Tax=RifCSPlowO2_12_Nitrospi
Three-deoxy-D-manno-octulosonic-acid transferase domain protein id=4894422 bin=GWC2_Nitrospirae-rel_56_14 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
3-deoxy-D-manno-octulosonic-acid transferase
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_11711_11
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

7834..9387
DNA (1554bp) protein (518aa)
phosphoenolpyruvate carboxylase; K01595 phosphoenolpyruvate carboxylase [EC:4.1.1.31] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Phosphoenolpyruvate carboxylase n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HVN3_9BACT
phosphoenolpyruvate carboxylase
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_11711_12
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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9449..10480
DNA (1032bp) protein (344aa)
putative phosphotransferase (EC:2.7.1.-); K07102 Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
putative phosphotransferase (EC:2.7.1.-)
hypothetical protein n=1 Tax=Nitrospina sp. AB-629-B18 RepID=UPI000377837D
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_11711_13
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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comp(10647..11429)
DNA (783bp) protein (261aa)
ksgA; dimethyladenosine transferase (EC:2.1.1.48); K02528 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
ksgA; dimethyladenosine transferase (EC:2.1.1.48)
Ribosomal RNA small subunit methyltransferase A n=1 Tax=Caloramator australicus RC3 RepID=I7K9Z4_9CLOT
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_11711_14
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

11668..12903
DNA (1236bp) protein (412aa)
LL-diaminopimelate aminotransferase (EC:2.6.1.83); K10206 LL-diaminopimelate aminotransferase [EC:2.6.1.83] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
LL-diaminopimelate aminotransferase (EC:2.6.1.83)
Aminotransferase class I and II id=4759546 bin=GWC2_Deltaproteobacteria_42_51 species=Methanocaldococcus infernus genus=Methanocaldococcus taxon_order=Methanococcales taxon_class=Methanococci phylum=Euryarchaeota tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_11711_15
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

12915..13397
DNA (483bp) protein (161aa)
folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC:2.7.6.3); K00950 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3] Tax=RifCSPlowO2_12_Nitrosp
folK; 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC:2.7.6.3)
7, 8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) id=4759545 bin=GWC2_Deltaproteobacteria_42_51 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_11711_16
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

13394..14041
DNA (648bp) protein (216aa)
Deoxynucleoside kinase family protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Deoxynucleoside kinase family protein id=3065156 bin=GWC2_Nitrospirae-rel_56_14 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
Deoxynucleoside kinase family protein
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_11711_17
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

14223..15074
DNA (852bp) protein (284aa)
panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase; K00606 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
3-methyl-2-oxobutanoate hydroxymethyltransferase n=2 Tax=Geobacter metallireducens RepID=PANB_GEOMG
panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_11711_18
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

15071..15919
DNA (849bp) protein (283aa)
pantoate--beta-alanine ligase (EC:6.3.2.1); K01918 pantoate--beta-alanine ligase [EC:6.3.2.1] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
pantoate--beta-alanine ligase (EC:6.3.2.1)
Pantothenate synthetase n=1 Tax=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) RepID=PANC_CALS8
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_11711_19
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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15916..16263
DNA (348bp) protein (116aa)
aspartate 1-decarboxylase (EC:4.1.1.11); K01579 aspartate 1-decarboxylase [EC:4.1.1.11] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
aspartate 1-decarboxylase (EC:4.1.1.11)
Aspartate 1-decarboxylase n=5 Tax=Thermoanaerobacter RepID=PAND_THEP3
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_11711_20
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

16525..17229
DNA (705bp) protein (235aa)
hypothetical protein n=1 Tax=Thermodesulfatator atlanticus RepID=UPI0003B78FBD
hypothetical protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
hypothetical protein
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_11711_21
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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comp(17284..19776)
DNA (2493bp) protein (831aa)
hypF; carbamoyltransferase HypF2 (EC:2.1.3.-) Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
hypF; carbamoyltransferase HypF2 (EC:2.1.3.-)
Hydrogenase maturation protein n=1 Tax=planctomycete KSU-1 RepID=I3IGJ0_9PLAN
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_11711_22
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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comp(19804..20040)
DNA (237bp) protein (79aa)
Putative uncharacterized protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Putative uncharacterized protein id=3594620 bin=GWF2_Lentisphaerae_52_8 species=delta proteobacterium MLMS-1 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Lentisphaerae_52_8 organism_group=Lentisphaerae
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_11711_23
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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comp(20046..20342)
DNA (297bp) protein (99aa)
hypothetical protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Putative uncharacterized protein id=3594616 bin=GWF2_Lentisphaerae_52_8 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWF2_Lentisphaerae_52_8 organism_group=Lentisphaerae
hypothetical protein
Displaying 24 items

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