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RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_5104

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_5104_1
Spirochaeta sp. JC230, Spirochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

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comp(1..96)
DNA (96bp) protein (32aa)
tuf; elongation factor Tu-B
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=1480694 species="Bacteria; Spirochaetes; Spirochaetales; Sp
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_5104_2
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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comp(128..2233)
DNA (2106bp) protein (702aa)
fusA-3; translation elongation factor G; K02355 elongation factor G Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Elongation factor G id=2242551 bin=GWB2_Geobacter-like_52_12 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Geobacter-like_52_12 organism_group=Deltaproteobacteria organism_desc=Good
fusA-3; translation elongation factor G
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_5104_3
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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comp(2246..2716)
DNA (471bp) protein (157aa)
30S ribosomal protein S7 n=1 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q08ZK1_STIAD
rpsG; 30S ribosomal protein S7; K02992 small subunit ribosomal protein S7 Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
rpsG; 30S ribosomal protein S7
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_5104_4
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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comp(2812..3189)
DNA (378bp) protein (126aa)
30S ribosomal protein S12 n=1 Tax=Desulfobacca acetoxidans (strain ATCC 700848 / DSM 11109 / ASRB2) RepID=F2NJE4_DESAR
30S ribosomal protein S12; K02950 small subunit ribosomal protein S12 Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
30S ribosomal protein S12
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_5104_5
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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comp(3308..7414)
DNA (4107bp) protein (1369aa)
rpoC; DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6); K03046 DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
rpoC; DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta' n=1 Tax=Nitrospina gracilis 3/211 RepID=M1YXT9_9BACT
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_5104_6
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(7492..11523)
DNA (4032bp) protein (1344aa)
rpoB; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6); K03043 DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
rpoB; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
hypothetical protein, partial n=1 Tax=Nitrospina sp. AB-629-B18 RepID=UPI00035E9EA7
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_5104_7
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists


comp(11568..11963)
DNA (396bp) protein (132aa)
50S ribosomal protein L7/L12 n=1 Tax=Desulfurispirillum indicum (strain ATCC BAA-1389 / S5) RepID=E6W245_DESIS
50S ribosomal protein L7/L12; K02935 large subunit ribosomal protein L7/L12 Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
50S ribosomal protein L7/L12
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_5104_8
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists


comp(12052..12570)
DNA (519bp) protein (173aa)
50S ribosomal protein L10; K02864 large subunit ribosomal protein L10 Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
50S ribosomal protein L10 id=1845431 bin=GWB2_Nitrospirae_rel_47_37 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
50S ribosomal protein L10
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_5104_9
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists


comp(12598..13308)
DNA (711bp) protein (237aa)
50S ribosomal protein L1; K02863 large subunit ribosomal protein L1 Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
50S ribosomal protein L1
50S ribosomal protein L1 id=4442437 bin=GWC2_Syntrophus__56_31 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_5104_10
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists


comp(13315..13746)
DNA (432bp) protein (144aa)
50S ribosomal protein L11 n=1 Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=RL11_SYNFM
50S ribosomal protein L11; K02867 large subunit ribosomal protein L11 Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
50S ribosomal protein L11
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_5104_11
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(13757..14284)
DNA (528bp) protein (176aa)
Transcription termination/antitermination protein NusG n=1 Tax=Nitrospina gracilis 3/211 RepID=M1YYF6_9BACT
nusG; component in transcription antitermination Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
nusG; component in transcription antitermination
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_5104_12
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(14384..14575)
DNA (192bp) protein (64aa)
Protein translocase subunit SecE n=1 Tax=Thermodesulfatator indicus (strain DSM 15286 / JCM 11887 / CIR29812) RepID=F8A9W5_THEID
preprotein translocase subunit SecE; K03073 preprotein translocase subunit SecE Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
preprotein translocase subunit SecE
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_5104_trna_1
unknown

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comp(14615..14688)
DNA (74bp)
transferRNA
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_5104_13
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(14898..14990)
DNA (93bp) protein (31aa)
translation elongation factor Tu; K02358 elongation factor Tu Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Displaying 14 items

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