ggKbase home page

RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_6007

Search features with annotation key words

Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_6007_1
R_Nitrospinae_39_10, Nitrospinae, Bacteria

Not on your lists

1..399
DNA (399bp) protein (133aa)
ATPase YjeE, predicted to have essential role in cell wall biosynthesis n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CDP3_9CLOT
ATP/GTP hydrolase; K06925 UPF0079 ATP-binding protein Tax=RIFCSPLOWO2_01_FULL_Nitrospinae_39_10_curated
ATP/GTP hydrolase
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_6007_2
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

501..1055
DNA (555bp) protein (185aa)
Uncharacterized protein n=1 Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9M9Q9_GEODF
hypothetical protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
hypothetical protein
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_6007_3
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

1055..1633
DNA (579bp) protein (193aa)
Uncharacterized protein n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8V1Z4_9AQUI
OstA-like protein; K09774 lipopolysaccharide export system protein LptA Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
hypothetical protein
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_6007_4
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

1639..2361
DNA (723bp) protein (241aa)
Lipopolysaccharide export system, ATP-binding protein LptB n=1 Tax=Nitrospina gracilis 3/211 RepID=M1ZD96_9BACT
ABC transporter ATP-binding protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
ABC transporter ATP-binding protein
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_6007_5
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

2482..3915
DNA (1434bp) protein (478aa)
RNA polymerase, sigma-54 factor (Sigma N) n=1 Tax=Nitrospina gracilis 3/211 RepID=M1Z085_9BACT
rpoN; RNA polymerase sigma-54 factor RpoN; K03092 RNA polymerase sigma-54 factor Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
rpoN; RNA polymerase sigma-54 factor RpoN
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_6007_6
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

3967..4515
DNA (549bp) protein (183aa)
Ribosomal subunit interface protein n=1 Tax=Desulfurispirillum indicum (strain ATCC BAA-1389 / S5) RepID=E6W109_DESIS
ribosomal subunit interface protein; K05808 putative sigma-54 modulation protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
ribosomal subunit interface protein
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_6007_7
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

4512..4976
DNA (465bp) protein (155aa)
PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN; K02806 PTS system, nitrogen regulatory IIA component [EC:2.7.1.69] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
hypothetical protein n=1 Tax=Nitrospina sp. AB-629-B18 RepID=UPI00036087B9
PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_6007_8
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

4973..6802
DNA (1830bp) protein (610aa)
phosphoenolpyruvate-protein phosphotransferase; K08483 phosphotransferase system, enzyme I, PtsI [EC:2.7.3.9] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
phosphoenolpyruvate-protein phosphotransferase; K08483 phosphotransferase system, enzyme I, PtsI [EC:2.7.3.9] id=15192451 bin=GWC2_NOV_55_46 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_NOV_55_46 organism_group=Proteobacteria
phosphoenolpyruvate-protein phosphotransferase
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_6007_9
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

6847..8013
DNA (1167bp) protein (389aa)
metK; methionine adenosyltransferase (EC:2.5.1.6) Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
metK; methionine adenosyltransferase (EC:2.5.1.6)
S-adenosylmethionine synthase n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MJ08_9BACT
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_6007_10
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

8133..9425
DNA (1293bp) protein (431aa)
ahcY; S-adenosyl-L-homocysteine hydrolase (EC:3.3.1.1); K01251 adenosylhomocysteinase [EC:3.3.1.1] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
ahcY; S-adenosyl-L-homocysteine hydrolase (EC:3.3.1.1)
Adenosylhomocysteinase n=1 Tax=planctomycete KSU-1 RepID=I3IPQ1_9PLAN
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_6007_11
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

9527..10306
DNA (780bp) protein (260aa)
Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_6007_12
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(10356..12494)
DNA (2139bp) protein (713aa)
Putative oligopeptide ABC transporter, oligopeptide-binding protein AppA n=1 Tax=delta proteobacterium NaphS2 RepID=D8F8B0_9DELT
peptide ABC transporter substrate-binding protein; K02035 peptide/nickel transport system substrate-binding protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
peptide ABC transporter substrate-binding protein
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_6007_13
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(12522..13703)
DNA (1182bp) protein (394aa)
ATP-dependent DNA helicase RecG; K03655 ATP-dependent DNA helicase RecG [EC:3.6.4.12] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
ATP-dependent DNA helicase RecG n=2 Tax=Geobacter metallireducens RepID=Q39UR6_GEOMG
recG; ATP-dependent DNA helicase RecG
Displaying 13 items

View Taxonomy