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RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2760

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2760_1
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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comp(2..397)
DNA (396bp) protein (132aa)
Uncharacterized protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q4C1_9BACT
CRISPR-associated protein, Cas6 family Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
CRISPR-associated endoribonuclease Cas6
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2760_2
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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489..3143
DNA (2655bp) protein (885aa)
hypothetical protein; K00974 tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Adenosine-specific tRNA nucleotidyltransferase id=3350313 bin=GWC2_Nitrospirae_57_13 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
hypothetical protein
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2760_3
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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3304..3951
DNA (648bp) protein (216aa)
Peptidase M50 n=1 Tax=Thermodesulfatator indicus (strain DSM 15286 / JCM 11887 / CIR29812) RepID=F8AD22_THEID
peptidase M50 Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
peptidase M50
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2760_4
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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4021..5016
DNA (996bp) protein (332aa)
trpS; tryptophanyl-tRNA synthetase (EC:6.1.1.2); K01867 tryptophanyl-tRNA synthetase [EC:6.1.1.2] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
trpS; tryptophanyl-tRNA synthetase (EC:6.1.1.2)
Tryptophan--tRNA ligase n=1 Tax=Nitrospina gracilis 3/211 RepID=M1Z1C1_9BACT
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2760_5
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

5081..6298
DNA (1218bp) protein (406aa)
lysC; aspartokinase (EC:2.7.2.4); K00928 aspartate kinase [EC:2.7.2.4] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
lysC; aspartokinase (EC:2.7.2.4)
Aspartokinase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8P8E8_9BACT
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2760_6
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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6382..7947
DNA (1566bp) protein (522aa)
putative alpha-isopropylmalate/homocitrate synthase family transferase; K01649 2-isopropylmalate synthase [EC:2.3.3.13] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
2-isopropylmalate synthase/homocitrate synthase family protein id=1897152 bin=GWD2_Desulfuromonadales_54_10 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Desulfuromonadales_54_10 organism_group=Deltaproteobacteria
putative alpha-isopropylmalate/homocitrate synthase family transferase
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2760_7
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(7995..8972)
DNA (978bp) protein (326aa)
glucokinase; K00845 glucokinase [EC:2.7.1.2] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Glucokinase id=1976392 bin=GWD2_Nitrospirae-related_57_8 species=Thermincola potens genus=Thermincola taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_Nitrospirae-related_57_8 organism_group=Nitrospirae organism_desc=Many Proteobacteria hits
glucokinase
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2760_8
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

9138..9956
DNA (819bp) protein (273aa)
dapF; diaminopimelate epimerase (EC:5.1.1.7); K01778 diaminopimelate epimerase [EC:5.1.1.7] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
dapF; diaminopimelate epimerase (EC:5.1.1.7)
Diaminopimelate epimerase id=4873761 bin=GWC2_Syntrophobacterales_56_13 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophobacterales_56_13 organism_group=Deltaproteobacteria organism_desc=Good +
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2760_9
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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10048..10920
DNA (873bp) protein (291aa)
dihydrodipicolinate synthase (EC:4.2.1.52); K01714 dihydrodipicolinate synthase [EC:4.2.1.52] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
dihydrodipicolinate synthase (EC:4.2.1.52)
Dihydrodipicolinate synthase id=4789626 bin=GWC2_Nitrospirae-rel_56_14 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2760_10
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

10927..11775
DNA (849bp) protein (283aa)
dapB; dihydrodipicolinate reductase (EC:1.3.1.26); K00215 dihydrodipicolinate reductase [EC:1.3.1.26] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
dapB; dihydrodipicolinate reductase (EC:1.3.1.26)
Dihydrodipicolinate reductase id=2550771 bin=GWC2_Syntrophobacterales_56_13 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophobacterales_56_13 organism_group=Deltaproteobacteria organism_desc=Good +
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2760_11
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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comp(11796..13988)
DNA (2193bp) protein (731aa)
Fis family two component sigma54 specific transcriptional regulator; K13599 two-component system, NtrC family, nitrogen regulation response regulator NtrX Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
UDP-3-O-acyl-N-acetylglucosamine deacetylase id=4304429 bin=GWC2_Deltaproteobacteria_42_51 species=SAR324 cluster bacterium SCGC AAA001-C10 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
Fis family two component sigma54 specific transcriptional regulator
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2760_12
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(14050..16269)
DNA (2220bp) protein (740aa)
hypothetical protein n=1 Tax=Nitrospina sp. SCGC AAA288-L16 RepID=UPI000363E159
multi-sensor signal transduction histidine kinase Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
multi-sensor signal transduction histidine kinase
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2760_13
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(16324..16950)
DNA (627bp) protein (209aa)
hypothetical protein n=1 Tax=Nitrospina sp. AB-629-B18 RepID=UPI0003742690
hypothetical protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
hypothetical protein
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2760_14
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(16983..17909)
DNA (927bp) protein (309aa)
galE; UDP-glucose 4-epimerase; K01784 UDP-glucose 4-epimerase [EC:5.1.3.2] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
ial:IALB_2002 galE; UDP-glucose 4-epimerase; K01784 UDP-glucose 4-epimerase [EC:5.1.3.2] id=719942 bin=RAAC39 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=RAAC39 organism_group=Ignavibacteria
galE; UDP-glucose 4-epimerase
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2760_15
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(17920..20475)
DNA (2556bp) protein (852aa)
DNA mismatch repair protein MutS; K03555 DNA mismatch repair protein MutS Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
DNA mismatch repair protein MutS id=4907887 bin=GWC2_Nitrospirae-rel_56_14 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
DNA mismatch repair protein MutS
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2760_16
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(20515..21174)
DNA (660bp) protein (220aa)
putative rhomboid serine protease (EC:3.4.21.105) Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
putative rhomboid serine protease (EC:3.4.21.105)
hypothetical protein n=1 Tax=Atribacteria bacterium SCGC AAA252-M02 RepID=UPI00036FCFC7
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2760_17
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(21181..21945)
DNA (765bp) protein (255aa)
silent information regulator protein Sir2; K12410 NAD-dependent deacetylase [EC:3.5.1.-] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
NAD-dependent protein deacylase id=8267121 bin=CD_OP8_4m species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=CD_OP8_4m organism_group=OP8 (Aminicenantes)
silent information regulator protein Sir2
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2760_18
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(21975..22448)
DNA (474bp) protein (158aa)
Putative uncharacterized protein n=1 Tax=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) RepID=O30137_ARCFU
hypothetical protein; K07066 Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
putative nucleic acid-binding protein
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2760_19
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(22445..22741)
DNA (297bp) protein (99aa)
Putative uncharacterized protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PVV2_9BACT
hypothetical protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
hypothetical protein
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2760_20
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

23019..23261
DNA (243bp) protein (81aa)
Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2760_21
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(23676..24500)
DNA (825bp) protein (275aa)
helicase c2; K03722 ATP-dependent DNA helicase DinG [EC:3.6.4.12] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
ATP-dependent helicase, DinG family protein id=1895053 bin=GWD2_Nitrospirae-related_57_8 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWD2_Nitrospirae-related_57_8 organism_group=Nitrospirae organism_desc=Many Proteobacteria hits
helicase c2
Displaying 21 items

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