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RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_19001

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_19001_1
RLO_Nitrospinae_39_16, Nitrospinae, Bacteria

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comp(2..535)
-----------------
DNA (534bp)
protein (178aa)
cytochrome b/b6 protein; K03887 menaquinol-cytochrome c reductase cytochrome b subunit Tax=RifCSPlowO2_12_Nitrospinae_39_16_curated
Cytochrome b6 id=4348686 bin=GWC2_Deltaproteobacteria_42_51 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Euglenida tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
cytochrome b/b6 protein
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_19001_2
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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comp(745..1203)
-----------------
DNA (459bp)
protein (153aa)
id=4348685 Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
id=4348685 bin=GWC2_Deltaproteobacteria_42_51 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_19001_3
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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comp(1544..3343)
-----------------
DNA (1800bp)
protein (600aa)
nitrous-oxide reductase (EC:1.7.99.6); K00376 nitrous-oxide reductase [EC:1.7.2.4] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
nitrous-oxide reductase (EC:1.7.99.6)
Nitrous-oxide reductase id=2133764 bin=GWE2_Gallionellales_58_10 species=Geodermatophilus obscurus genus=Geodermatophilus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWE2_Gallionellales_58_10 organism_group=Betaproteobacteria organism_desc=Good, but small
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_19001_4
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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comp(3370..3795)
-----------------
DNA (426bp)
protein (142aa)
Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_19001_5
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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comp(4380..5789)
-----------------
DNA (1410bp)
protein (470aa)
response regulator in two-component reguatory system, sigma54 dependent transcriptional regulator Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
response regulator in two-component reguatory system, sigma54 dependent transcriptional regulator id=14429195 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
response regulator in two-component reguatory system, sigma54 dependent transcriptional regulator
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_19001_6
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(6083..8842)
-----------------
DNA (2760bp)
protein (920aa)
spermine synthase; K00797 spermidine synthase [EC:2.5.1.16] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
spermine synthase; K00797 spermidine synthase [EC:2.5.1.16] id=14429470 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Omnitrophica tax=bin3_NC10 organism_group=NC10
spermine synthase
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_19001_7
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(8877..9308)
-----------------
DNA (432bp)
protein (144aa)
XRE family transcriptional regulator Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Transcriptional regulator, XRE family id=3890045 bin=GWC2_Deltaproteobacteria_42_51 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
XRE family transcriptional regulator
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_19001_8
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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9472..9774
-----------------
DNA (303bp)
protein (101aa)
id=3890046 Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
id=3890046 bin=GWC2_Deltaproteobacteria_42_51 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_19001_9
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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9916..10284
-----------------
DNA (369bp)
protein (123aa)
GAF sensor hybrid histidine kinase Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
GAF sensor hybrid histidine kinase id=3890047 bin=GWC2_Deltaproteobacteria_42_51 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
GAF sensor hybrid histidine kinase
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_19001_10
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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comp(10461..12440)
-----------------
DNA (1980bp)
protein (660aa)
sensor histidine kinase; K02482 two-component system, NtrC family, sensor kinase [EC:2.7.13.3] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Sensor histidine kinase, HAMP domain-containing, 2 heme-binding sites n=2 Tax=Geobacter sulfurreducens RepID=D7AFS7_GEOSK
sensor histidine kinase, HAMP domain-containing protein
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_19001_11
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(12437..13297)
-----------------
DNA (861bp)
protein (287aa)
hypothetical protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Uncharacterized conserved protein id=4837376 bin=GWC2_Deltaproteobacteria_42_51 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
hypothetical protein
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_19001_12
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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comp(13434..14765)
-----------------
DNA (1332bp)
protein (444aa)
branched-chain amino acid ABC transporter substrate-binding protein; K01999 branched-chain amino acid transport system substrate-binding protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Branched-chain amino acid ABC transporter, substrate-binding protein id=3235169 bin=GWC2_Deltaproteobacteria_42_51 species=Deferribacter desulfuricans genus=Deferribacter taxon_order=Deferribacterales taxon_class=Deferribacteres phylum=Deferribacteres tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
branched-chain amino acid ABC transporter substrate-binding protein
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_19001_13
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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14868..15497
-----------------
DNA (630bp)
protein (210aa)
hypothetical protein n=1 Tax=Hydrogenedentes bacterium JGI 0000039-J10 RepID=UPI000379D914
hypothetical protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
hypothetical protein
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_19001_14
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

15568..16044
-----------------
DNA (477bp)
protein (159aa)
Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_19001_15
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(16158..16553)
-----------------
DNA (396bp)
protein (132aa)
Quinol:cytochrome c oxidoreductase pentaheme cytochrome subunit n=1 Tax=Leadbetterella byssophila (strain DSM 17132 / KACC 11308 / 4M15) RepID=E4RUZ8_LEAB4
quinol:cytochrome c oxidoreductase pentaheme cytochrome subunit Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
quinol:cytochrome c oxidoreductase pentaheme cytochrome subunit
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_19001_16
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(16550..17209)
-----------------
DNA (660bp)
protein (220aa)
Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_19001_17
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(17241..18608)
-----------------
DNA (1368bp)
protein (456aa)
hypothetical protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
hypothetical protein id=14428736 bin=bin3_NC10 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=bin3_NC10 organism_group=NC10
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_19001_18
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(18609..20084)
-----------------
DNA (1476bp)
protein (492aa)
gliding motility ABC transporter auxillary protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Putative ABC-type uncharacterized transport system involved in gliding motility auxiliary component-like id=3235158 bin=GWC2_Deltaproteobacteria_42_51 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
gliding motility ABC transporter auxillary protein
Displaying 18 items

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