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RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_3374

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_3374_1
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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2..445
DNA (444bp) protein (148aa)
hypothetical protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_3374_2
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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536..3256
DNA (2721bp) protein (907aa)
UTP-GlnB (protein PII) uridylyltransferase, GlnD; K00990 [protein-PII] uridylyltransferase [EC:2.7.7.59] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
[Protein-PII] uridylyltransferase (PII uridylyl-transferase) (Uridylyl-removing enzyme) (UTase) (EC:2.7.7.59) id=14429483 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
glnD; nitrogen regulatory protein P-II uridylyltransferase, GlnD
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_3374_3
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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3261..4259
DNA (999bp) protein (333aa)
phoL; phoH-like protein; K06217 phosphate starvation-inducible protein PhoH and related proteins Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
PhoH-like protein id=4810163 bin=GWC2_Nitrospirae-rel_56_14 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
phoL; phoH-like protein
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_3374_4
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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4256..6757
DNA (2502bp) protein (834aa)
Metal dependent phosphohydrolase n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1K124_DESAC
HD domain-containing protein; K07037 Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
phosphohydrolase
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_3374_5
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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7179..7667
DNA (489bp) protein (163aa)
hypothetical protein n=1 Tax=Nitrospina sp. SCGC AAA288-L16 RepID=UPI000378BD20
histidine triad (HIT) protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
histidine triad (HIT) protein
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_3374_6
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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comp(7691..9460)
DNA (1770bp) protein (590aa)
ABC transporter-like protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
ABC-type multidrug transport system component id=2623125 bin=GWF2_Ignavibacteria_35_20 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWF2_Ignavibacteria_35_20 organism_group=Ignavibacteria
ABC transporter-like protein
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_3374_7
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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comp(9461..11218)
DNA (1758bp) protein (586aa)
ABC transporter, ATPase subunit n=1 Tax=Nitrospina gracilis 3/211 RepID=M1ZCM1_9BACT
ABC transporter, ATPase subunit; K06147 ATP-binding cassette, subfamily B, bacterial Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
ABC transporter ATPase
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_3374_8
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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comp(11206..11787)
DNA (582bp) protein (194aa)
molybdopterin-guanine dinucleotide biosynthesis protein MobA; K03752 molybdopterin-guanine dinucleotide biosynthesis protein A [EC:2.7.7.77] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Molybdenum cofactor guanylyltransferase id=3218037 bin=GWF2_Syntrophobacterales_56_9 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Syntrophobacterales_56_9 organism_group=Deltaproteobacteria
molybdopterin-guanine dinucleotide biosynthesis protein MobA
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_3374_9
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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comp(11784..12248)
DNA (465bp) protein (155aa)
Putative uncharacterized protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PV69_9BACT
hypothetical protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
hypothetical protein
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_3374_10
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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comp(12286..13989)
DNA (1704bp) protein (568aa)
alpha-glucan phosphorylase; K00688 starch phosphorylase [EC:2.4.1.1] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Alpha-glucan phosphorylase id=2315691 bin=GWB2_Nitrospirae_rel_47_37 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
alpha-glucan phosphorylase
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_3374_11
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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comp(13986..15098)
DNA (1113bp) protein (371aa)
tetraacyldisaccharide 4'-kinase (EC:2.7.1.130); K00912 tetraacyldisaccharide 4'-kinase [EC:2.7.1.130] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
tetraacyldisaccharide 4'-kinase (EC:2.7.1.130)
Tetraacyldisaccharide 4'-kinase n=1 Tax=Nitrospina gracilis 3/211 RepID=M1ZAJ1_9BACT
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_3374_12
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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15103..16002
DNA (900bp) protein (300aa)
radical SAM domain-containing protein; K04070 putative pyruvate formate lyase activating enzyme [EC:1.97.1.4] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Radical SAM domain protein n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G3U4_GEOUR
radical SAM domain-containing protein
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_3374_13
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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comp(16017..16673)
DNA (657bp) protein (219aa)
hypothetical protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Uncharacterized protein id=3956730 bin=GWC2_Nitrospirae_57_13 species=Bacteroides sp. D2 genus=Bacteroides taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
hypothetical protein
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_3374_14
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(16696..17832)
DNA (1137bp) protein (379aa)
carA; carbamoyl phosphate synthase small subunit; K01956 carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
carA; carbamoyl phosphate synthetase, glutamine amidotransferase small subunit (EC:6.3.5.5) id=14430879 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
carA; carbamoyl phosphate synthase small subunit
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_3374_15
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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comp(18175..18333)
DNA (159bp) protein (53aa)
Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_3374_16
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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comp(18317..18586)
DNA (270bp) protein (90aa)
Uncharacterized protein n=1 Tax=uncultured Thiohalocapsa sp. PB-PSB1 RepID=V4JFN1_9GAMM
hypothetical protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
hypothetical protein
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_3374_17
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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comp(18644..18766)
DNA (123bp) protein (41aa)
Xre family transcriptional regulator Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Transcriptional regulator, XRE family id=4763463 bin=GWC2_Proteo_65_14_Ab886 species=uncultured bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
XRE family transcriptional regulator
Displaying 17 items

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