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RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2205

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2205_1
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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comp(3..104)
DNA (102bp) protein (34aa)
ABC transporter ATP-binding protein; K09687 antibiotic transport system ATP-binding protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2205_trna_1
unknown

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242..314
DNA (73bp)
transferRNA
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2205_2
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

349..1170
DNA (822bp) protein (274aa)
Putative DNA uptake lipoprotein-like protein n=1 Tax=Nitrospina gracilis 3/211 RepID=M1YYV8_9BACT
Tetratricopeptide TPR_2 Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Tetratricopeptide TPR_2
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2205_3
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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1173..2015
DNA (843bp) protein (281aa)
RNA polymerase sigma factor n=1 Tax=Nitrospina gracilis 3/211 RepID=M1YK99_9BACT
RNA polymerase sigma-32 subunit RpoH; K03086 RNA polymerase primary sigma factor Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
RNA polymerase sigma-32 subunit RpoH
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2205_4
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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2023..2685
DNA (663bp) protein (221aa)
Transglycosylase, Slt family protein n=1 Tax=gamma proteobacterium IMCC1989 RepID=F3LEM0_9GAMM
lytic transglycosylase Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
lytic transglycosylase
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2205_5
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

2768..3538
DNA (771bp) protein (257aa)
chromosome segregation and condensation protein ScpA; K05896 segregation and condensation protein A Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Segregation and condensation protein A id=3738390 bin=GWC2_Nitrospirae_57_13 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
chromosome segregation and condensation protein ScpA
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2205_6
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

3507..4187
DNA (681bp) protein (227aa)
hypothetical protein n=1 Tax=Nitrospina sp. AB-629-B18 RepID=UPI00037B972E
hypothetical protein; K06024 segregation and condensation protein B Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
scpB; chromosome segregation and condensation protein ScpB
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2205_7
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

4180..4950
DNA (771bp) protein (257aa)
RsuA2; 16S rRNA uridine-516 pseudouridylate synthase; K06183 16S rRNA pseudouridine516 synthase [EC:5.4.99.19] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Pseudouridine synthase n=2 Tax=Caldanaerobacter subterraneus RepID=Q8R5S6_THETN
RsuA2; 16S rRNA uridine-516 pseudouridylate synthase
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2205_8
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

4947..5861
DNA (915bp) protein (305aa)
Uncharacterized protein n=1 Tax=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) RepID=A8ZXP5_DESOH
hypothetical protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
hypothetical protein
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2205_9
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

5879..9298
DNA (3420bp) protein (1140aa)
transcription-repair coupling factor; K03723 transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Transcription-repair-coupling factor n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GDJ7_GEOUR
transcription-repair coupling factor
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2205_10
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

9311..10309
DNA (999bp) protein (333aa)
foldase protein PrsA; K03769 peptidyl-prolyl cis-trans isomerase C [EC:5.2.1.8] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Putative foldase protein PrsA id=4691707 bin=GWC2_Syntrophus__56_31 species=Cystobacter fuscus genus=Cystobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
foldase protein PrsA
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2205_11
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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10306..11331
DNA (1026bp) protein (342aa)
PpiC-type peptidyl-prolyl cis-trans isomerase; K03771 peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
hypothetical protein n=1 Tax=Nitrospina sp. AB-629-B18 RepID=UPI00036C9203
PpiC-type peptidyl-prolyl cis-trans isomerase
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2205_12
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

11389..12435
DNA (1047bp) protein (349aa)
hypothetical protein; K03593 ATP-binding protein involved in chromosome partitioning Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Putative uncharacterized protein id=3358800 bin=GWC2_Deltaproteobacteria_56_8 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Deltaproteobacteria_56_8 organism_group=Deltaproteobacteria
hypothetical protein
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2205_13
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(12472..12825)
DNA (354bp) protein (118aa)
endonuclease (EC:3.1.-.-); K07460 putative endonuclease Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
endonuclease (EC:3.1.-.-)
UPF0102 protein SYNAS_23220 n=1 Tax=Syntrophus aciditrophicus (strain SB) RepID=Y2322_SYNAS
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2205_14
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(12922..13533)
DNA (612bp) protein (204aa)
rnhB; ribonuclease HII (EC:3.1.26.4); K03470 ribonuclease HII [EC:3.1.26.4] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Ribonuclease HII n=2 Tax=Geobacter sulfurreducens RepID=RNH2_GEOSL
rnhB; ribonuclease HII
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2205_15
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists


comp(13563..13910)
DNA (348bp) protein (116aa)
50S ribosomal protein L19 n=1 Tax=Brevibacillus sp. phR RepID=UPI00030D3F68
rplS; 50S ribosomal protein L19; K02884 large subunit ribosomal protein L19 Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
rplS; 50S ribosomal protein L19
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2205_16
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(13924..14229)
DNA (306bp) protein (102aa)
hypothetical protein n=1 Tax=Nitrospina sp. AB-629-B18 RepID=UPI0003814CB9
hypothetical protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
hypothetical protein
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2205_17
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(14487..15188)
DNA (702bp) protein (234aa)
trmD; tRNA (guanine-N(1)-)-methyltransferase (EC:2.1.1.31); K00554 tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
tRNA (guanine-N(1)-)-methyltransferase n=1 Tax=Dehalococcoides ethenogenes (strain 195) RepID=TRMD_DEHE1
tRNA (guanine-N1)-methyltransferase
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2205_18
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(15372..15602)
DNA (231bp) protein (77aa)
UPF0109 protein dsat_0502 n=1 Tax=Desulfovibrio alkalitolerans DSM 16529 RepID=S7T8Y0_9DELT
hypothetical protein; K06960 Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
hypothetical protein
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2205_19
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists


comp(15640..15879)
DNA (240bp) protein (80aa)
30S ribosomal protein S16 n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IFX9_9FIRM
rpsP; 30S ribosomal protein S16; K02959 small subunit ribosomal protein S16 Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
30S ribosomal protein S16
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2205_20
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists


comp(15958..17310)
DNA (1353bp) protein (451aa)
signal recognition particle protein; K03106 signal recognition particle subunit SRP54 Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Signal recognition particle protein id=4141217 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
signal recognition particle protein
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2205_21
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

17469..17795
DNA (327bp) protein (109aa)
Uncharacterized protein n=1 Tax=Thermotoga thermarum DSM 5069 RepID=F7YVJ3_9THEM
hypothetical protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
hypothetical protein
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2205_22
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

17810..18103
DNA (294bp) protein (98aa)
DNA polymerase beta domain protein region n=1 Tax=Archaeoglobus veneficus (strain DSM 11195 / SNP6) RepID=F2KN03_ARCVS
DNA polymerase beta domain-containing protein; K07075 Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
DNA polymerase beta domain-containing protein
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2205_23
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

18477..21269
DNA (2793bp) protein (931aa)
ileS; isoleucyl-tRNA synthetase; K01870 isoleucyl-tRNA synthetase [EC:6.1.1.5] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Isoleucine--tRNA ligase n=1 Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LEH3_SYNFM
ileS; isoleucyl-tRNA synthetase
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2205_24
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

21266..21763
DNA (498bp) protein (166aa)
lipoprotein signal peptidase (EC:3.4.23.36); K03101 signal peptidase II [EC:3.4.23.36] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
lipoprotein signal peptidase (EC:3.4.23.36)
Lipoprotein signal peptidase n=1 Tax=Geobacter sp. (strain M18) RepID=E8WUY3_GEOS8
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2205_25
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

21806..22606
DNA (801bp) protein (267aa)
prolipoprotein diacylglyceryl transferase; K13292 phosphatidylglycerol:prolipoprotein diacylglycerol transferase [EC:2.-.-.-] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Prolipoprotein diacylglyceryl transferase id=4128092 bin=GWF2_Nitrospirae_44_13 species=uncultured Desulfobacterium sp. genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
prolipoprotein diacylglyceryl transferase
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2205_26
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

22619..23608
DNA (990bp) protein (330aa)
ribosomal large subunit pseudouridine synthase D (EC:5.4.99.-); K06180 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
ribosomal large subunit pseudouridine synthase D (EC:5.4.99.-)
Pseudouridine synthase n=1 Tax=Clostridium sp. CAG:43 RepID=R7B5G0_9CLOT
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2205_27
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(23736..24008)
DNA (273bp) protein (91aa)
Bacterial nucleoid protein HU beta subunit n=1 Tax=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) RepID=Q1GX85_METFK
nucleoid protein HU beta subunit; K03530 DNA-binding protein HU-beta Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
histone-like DNA-binding protein
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_2205_28
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(24219..24572)
DNA (354bp) protein (118aa)
Uncharacterized protein conserved in bacteria n=1 Tax=Clostridium sp. CAG:299 RepID=R6Z7A9_9CLOT
hypothetical protein; K09765 hypothetical protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
DNA integration/recombination/invertion protein
Displaying 29 items

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