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RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_5229

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_5229_1
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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114..371
DNA (258bp) protein (86aa)
Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_5229_2
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

374..1138
DNA (765bp) protein (255aa)
hypothetical protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Putative uncharacterized protein id=4847323 bin=GWC2_Deltaproteobacteria_42_51 species=Azoarcus sp. KH32C genus=Azoarcus taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
hypothetical protein
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_5229_3
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

1247..2104
DNA (858bp) protein (286aa)
hypothetical protein n=1 Tax=Nitrospina sp. SCGC AAA288-L16 RepID=UPI0003811373
hypothetical protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
hypothetical protein
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_5229_4
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

2214..3074
DNA (861bp) protein (287aa)
hypothetical protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Putative uncharacterized protein id=4920908 bin=GWC2_Deltaproteobacteria_42_51 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
hypothetical protein
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_5229_5
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

3059..4783
DNA (1725bp) protein (575aa)
hypothetical protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Putative uncharacterized protein id=4920908 bin=GWC2_Deltaproteobacteria_42_51 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
hypothetical protein
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_5229_6
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

4889..5344
DNA (456bp) protein (152aa)
Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_5229_7
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

5347..5865
DNA (519bp) protein (173aa)
Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_5229_8
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

5862..8036
DNA (2175bp) protein (725aa)
WD-40 repeat protein n=1 Tax=Cyanothece sp. (strain PCC 7424) RepID=B7K750_CYAP7
WD40 repeat-containing protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
hypothetical protein
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_5229_9
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

8109..9326
DNA (1218bp) protein (406aa)
General secretion pathway protein F n=1 Tax=delta proteobacterium NaphS2 RepID=D8EYF9_9DELT
gspF; general secretory pathway component, cryptic Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
gspF; general secretory pathway component, cryptic
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_5229_10
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

9414..9902
DNA (489bp) protein (163aa)
Pseudopilin, cryptic, general secretion pathway n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MJH5_9BACT
gspG; pseudopilin, cryptic, general secretion pathway Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
gspG; pseudopilin, cryptic, general secretion pathway
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_5229_11
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

9997..10398
DNA (402bp) protein (134aa)
Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_5229_12
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

10486..10887
DNA (402bp) protein (134aa)
General secretion pathway protein H n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5BVK3_NITHN
general secretion pathway protein H; K02458 general secretion pathway protein I Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
general secretion pathway protein H
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_5229_13
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

10977..11666
DNA (690bp) protein (230aa)
GspJ2 n=1 Tax=uncultured bacterium RepID=K1XBE8_9BACT
GspJ2 Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_5229_14
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

11762..12757
DNA (996bp) protein (332aa)
Type II secretion system protein K n=1 Tax=delta proteobacterium NaphS2 RepID=D8EYG4_9DELT
gspK2; protein GspK2; K02460 general secretion pathway protein K Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
gspK2; protein GspK2
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_5229_15
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

12729..14696
DNA (1968bp) protein (656aa)
Cytochrome C family protein n=1 Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9M448_GEODF
cytochrome C family protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
cytochrome C
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_5229_16
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(14865..15800)
DNA (936bp) protein (312aa)
NHL repeat containing protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
PKD domain containing protein id=4847325 bin=GWC2_Deltaproteobacteria_42_51 species=Methanosphaerula palustris genus=Methanosphaerula taxon_order=Methanomicrobiales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
hypothetical protein
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_5229_17
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(15797..17035)
DNA (1239bp) protein (413aa)
cytochrome C family protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Cytochrome C family protein id=4847327 bin=GWC2_Deltaproteobacteria_42_51 species=Desulfurivibrio alkaliphilus genus=Desulfurivibrio taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
cytochrome C family protein
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_5229_18
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

17521..18906
DNA (1386bp) protein (462aa)
sigma-54 dependent DNA-binding response regulator Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Two component, sigma54 specific, transcriptional regulator, Fis family id=3981663 bin=GWC2_CP_Nitrospirae-rel_42_7 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
Fis family transcriptional regulator
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_5229_19
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

19181..19558
DNA (378bp) protein (126aa)
hypothetical protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Putative uncharacterized protein id=1843315 bin=GWB2_Proteobacteria_55_19 species=Burkholderiales bacterium JOSHI_001 genus=unknown taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWB2_Proteobacteria_55_19 organism_group=Proteobacteria organism_desc=Good
hypothetical protein
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_5229_20
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

19584..20357
DNA (774bp) protein (258aa)
cytochrome c, class I Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
hypothetical protein id=15193763 bin=GWC2_NOV_55_46 species=unknown genus=unknown taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_NOV_55_46 organism_group=Proteobacteria
cytochrome c, class I
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_5229_21
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

20380..20775
DNA (396bp) protein (132aa)
hypothetical protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Menaquinol oxidoreductase complex Cbc5, cytochrome c subunit, putative, 12 heme-binding sites id=2432068 bin=GWC2_Deltaproteobacteria_55_46 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_55_46 organism_group=Deltaproteobacteria organism_desc=Clade sibling to the Geobacter/Pelobacter
hypothetical protein
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_5229_22
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

21058..22395
DNA (1338bp) protein (446aa)
hypothetical protein n=1 Tax=Desulfurobacterium sp. TC5-1 RepID=UPI0003B44373
hypothetical protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_5229_23
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

22496..23962
DNA (1467bp) protein (489aa)
OmpA family protein n=1 Tax=Sphingobacterium spiritivorum ATCC 33861 RepID=D7VJ32_9SPHI
OmpA/MotB domain-containing protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
OmpA/MotB domain-containing protein
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_5229_24
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

23999..24895
DNA (897bp) protein (299aa)
putative PKD domain-containing protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
NHL repeat containing protein id=4506788 bin=GWC2_Deltaproteobacteria_42_51 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
putative PKD domain-containing protein
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_5229_25
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

24885..26099
DNA (1215bp) protein (405aa)
id=2633298 Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
id=2633298 bin=GWC2_Deltaproteobacteria_42_51 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_5229_26
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

26134..27708
DNA (1575bp) protein (525aa)
hypothetical protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Putative uncharacterized protein id=4847341 bin=GWC2_Deltaproteobacteria_42_51 species=Treponema caldaria genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
hypothetical protein
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_5229_trna_1
unknown

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27910..27983
DNA (74bp)
transferRNA
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_5229_27
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

27996..28658
DNA (663bp) protein (221aa)
PHP domain protein n=1 Tax=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) RepID=B5YJN7_THEYD
PHP domain protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
PHP domain-containing protein
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_5229_28
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

28655..29332
DNA (678bp) protein (226aa)
hypothetical protein n=1 Tax=Nitrospina sp. SCGC AAA288-L16 RepID=UPI00036FD11A
hypothetical protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
hypothetical protein
Displaying 29 items

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