ggKbase home page

RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_24197

Search features with annotation key words

Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_24197_1
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

3..266
DNA (264bp) protein (88aa)
DNA polymerase IV (EC:2.7.7.7); K02346 DNA polymerase IV [EC:2.7.7.7] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
DNA polymerase IV (EC:2.7.7.7)
DNA polymerase IV id=4678902 bin=GWC2_Syntrophobacterales_56_13 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophobacterales_56_13 organism_group=Deltaproteobacteria organism_desc=Good +
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_24197_2
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(228..1550)
DNA (1323bp) protein (441aa)
GTPase Der n=1 Tax=Geobacter sp. (strain M18) RepID=E8WP59_GEOS8
ribosome-associated GTPase EngA; K03977 GTP-binding protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
ribosome-associated GTPase EngA
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_24197_3
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

1700..2245
DNA (546bp) protein (182aa)
def; peptide deformylase 2 (PDF 2) (Polypeptide deformylase 2) (EC:3.5.1.88) Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
def; peptide deformylase 2 (PDF 2) (Polypeptide deformylase 2) (EC:3.5.1.88) id=14429563 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
def; peptide deformylase 2 (PDF 2) (Polypeptide deformylase 2) (EC:3.5.1.88)
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_24197_trna_1
unknown

Not on your lists

comp(2253..2324)
DNA (72bp)
transferRNA
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_24197_4
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(2379..4679)
DNA (2301bp) protein (767aa)
pyruvate ferredoxin oxidoreductase alpha-beta subunit; K00169 pyruvate ferredoxin oxidoreductase, alpha subunit [EC:1.2.7.1] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
porA; pyruvate synthase subunit PorA (EC:1.2.7.1)
Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-binding domain protein n=1 Tax=Aneurinibacillus aneurinilyticus ATCC 12856 RepID=U1X536_ANEAE
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_24197_5
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(4706..5722)
DNA (1017bp) protein (339aa)
pyruvate/ketoisovalerate oxidoreductase subunit gamma; K00172 pyruvate ferredoxin oxidoreductase, gamma subunit [EC:1.2.7.1] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Pyruvate/ketoisovalerate oxidoreductase, gamma subunit id=4649237 bin=GWC2_Deltaproteobacteria_66_88 species=Caldicellulosiruptor saccharolyticus genus=Caldicellulosiruptor taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Deltaproteobacteria_66_88 organism_group=Deltaproteobacteria
pyruvate/ketoisovalerate oxidoreductase subunit gamma
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_24197_6
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(5776..6372)
DNA (597bp) protein (199aa)
Recombination protein RecR n=1 Tax=candidate division ZIXI bacterium RBG-1 RepID=T0LIG8_9BACT
recombination protein RecR; K06187 recombination protein RecR Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
recombination protein RecR
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_24197_7
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(6551..6862)
DNA (312bp) protein (104aa)
hypothetical protein; K09747 hypothetical protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Nucleoid-associated protein Dace_3096 id=4847314 bin=GWC2_Deltaproteobacteria_42_51 species=Desulfuromonas acetoxidans genus=Desulfuromonas taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
hypothetical protein
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_24197_8
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(6887..8482)
DNA (1596bp) protein (532aa)
dnaX; DNA polymerase III subunits gamma/tau; K02343 DNA polymerase III subunit gamma/tau [EC:2.7.7.7] Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
DNA polymerase III, subunits gamma and tau id=4847316 bin=GWC2_Deltaproteobacteria_42_51 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
dnaX; DNA polymerase III subunits gamma and tau
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_24197_9
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(9021..9149)
DNA (129bp) protein (43aa)
Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_24197_10
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(9136..9504)
DNA (369bp) protein (123aa)
Type III restriction-modification enzyme helicase subunit Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Type III restriction-modification enzyme helicase subunit id=3736846 bin=GWC2_OD1_43_27 species=Candidatus Parvarchaeum acidophilus genus=Candidatus Parvarchaeum taxon_order=unknown taxon_class=unknown phylum=Euryarchaeota tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
RIFCSPLOWO2_12_FULL_CP_39_93_rifcsplowo2_12_scaffold_24197_11
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

comp(9508..9669)
DNA (162bp) protein (54aa)
Type III restriction protein res subunit Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
Type III restriction protein res subunit id=3736844 bin=GWC2_OD1_43_27 species=Mesorhizobium sp. STM 4661 genus=Mesorhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
Displaying 12 items

View Taxonomy