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RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_15049

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_15049_1
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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1..192
DNA (192bp) protein (64aa)
nitrogen regulation protein NtrY; K13598 two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3] Tax=GWC2_Rokubacteria_70_16_curated
Sensor histidine kinase, HAMP and PAS domain-containing id=3102546 bin=GWC2_Methylomirabilis_70_16 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
multi-sensor signal transduction histidine kinase
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_15049_2
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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212..1507
DNA (1296bp) protein (432aa)
Sigma-54-dependent transcriptional response regulator id=3102547 bin=GWC2_Methylomirabilis_70_16 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
ntrX; two component signal transduction response regulator; K13599 two-component system, NtrC family, nitrogen regulation response regulator NtrX Tax=GWC2_Rokubacteria_70_16_curated
sigma-54-dependent transcriptional response regulator
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_15049_3
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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1615..3027
DNA (1413bp) protein (471aa)
protoporphyrinogen oxidase Tax=GWC2_Rokubacteria_70_16_curated
Amine oxidase id=3102549 bin=GWC2_Methylomirabilis_70_16 species=Thiocapsa marina genus=Thiocapsa taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
protoporphyrinogen oxidase
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_15049_4
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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3024..3875
DNA (852bp) protein (284aa)
Glycosyl transferase family 2 id=3102551 bin=GWC2_Methylomirabilis_70_16 species=Nitrolancetus hollandicus genus=Nitrolancetus taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
family 2 glycosyl transferase; K07011 Tax=GWC2_Rokubacteria_70_16_curated
family 2 glycosyl transferase
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_15049_5
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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3878..4534
DNA (657bp) protein (219aa)
undecaprenyl-phosphate galactosephosphotransferase (EC:2.7.8.6) Tax=GWC2_Rokubacteria_70_16_curated
undecaprenyl-phosphate galactosephosphotransferase (EC:2.7.8.6)
Undecaprenyl-phosphate galactose phosphotransferase id=3102554 bin=GWC2_Methylomirabilis_70_16 species=Caulobacter segnis genus=Caulobacter taxon_order=Caulobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_15049_6
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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comp(4589..5251)
DNA (663bp) protein (221aa)
Methyl-accepting chemotaxis aspartate transducer id=3102557 bin=GWC2_Methylomirabilis_70_16 species=Actinoplanes sp. genus=Actinoplanes taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
tas; Methyl-accepting chemotaxis aspartate transducer; K03406 methyl-accepting chemotaxis protein Tax=GWC2_Rokubacteria_70_16_curated
tas; Methyl-accepting chemotaxis aspartate transducer
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_15049_7
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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5467..6093
DNA (627bp) protein (209aa)
uracil phosphoribosyltransferase (EC:2.4.2.9); K02825 pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] Tax=GWC2_Rokubacteria_70_16_curated
uracil phosphoribosyltransferase (EC:2.4.2.9)
Bifunctional protein PyrR id=3102560 bin=GWC2_Methylomirabilis_70_16 species=Halothermothrix orenii genus=Halothermothrix taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_15049_8
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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6118..7044
DNA (927bp) protein (309aa)
pyrB; aspartate carbamoyltransferase (catalytic subunit) (EC:2.1.3.2) Tax=GWC2_Rokubacteria_70_16_curated
pyrB; aspartate carbamoyltransferase (catalytic subunit) (EC:2.1.3.2)
Aspartate carbamoyltransferase id=3102564 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_15049_9
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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7041..8315
DNA (1275bp) protein (425aa)
pyrC; dihydroorotase (EC:3.5.2.3) Tax=GWC2_Rokubacteria_70_16_curated
pyrC; dihydroorotase (EC:3.5.2.3)
Dihydroorotase id=3102567 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_15049_10
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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8312..9439
DNA (1128bp) protein (376aa)
carA; carbamoyl phosphate synthase small subunit; K01956 carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] Tax=GWC2_Rokubacteria_70_16_curated
Carbamoyl-phosphate synthase small chain id=3102573 bin=GWC2_Methylomirabilis_70_16 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
carA; carbamoyl phosphate synthase small subunit
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_15049_11
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

9447..9719
DNA (273bp) protein (91aa)
id=3102576 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
id=3102576 Tax=GWC2_Rokubacteria_70_16_curated
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_15049_12
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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9726..10667
DNA (942bp) protein (314aa)
carB; carbamoyl phosphate synthase, large subunit (EC:6.3.5.5) Tax=GWC2_Rokubacteria_70_16_curated
carB; carbamoyl phosphate synthase, large subunit (EC:6.3.5.5)
Carbamoyl-phosphate synthase large chain id=3102578 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Displaying 12 items

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