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RIFCSPLOWO2_12_FULL_Pseudomonas_fluorescens_59_450_rifcsplowo2_12_scaffold_3986

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Displaying items 1-30 of 61 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_12_FULL_Pseudomonas_fluorescens_59_450_rifcsplowo2_12_scaffold_3986_1
RLO_Pseudomonas_60_38, Gammaproteobacteria, Proteobacteria, Bacteria

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55..318
DNA (264bp) protein (88aa)
DNA-directed RNA polymerase omega subunit (EC:2.7.7.6)
rpoZ; DNA-directed RNA polymerase subunit omega (EC:2.7.7.6) Tax=RifCSPlowO2_12_Pseudomonas_60_38_curated
DNA-directed RNA polymerase subunit omega n=4 Tax=Pseudomonas RepID=I2BVI8_PSEFL
RIFCSPLOWO2_12_FULL_Pseudomonas_fluorescens_59_450_rifcsplowo2_12_scaffold_3986_2
RLO_Pseudomonas_60_38, Gammaproteobacteria, Proteobacteria, Bacteria

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379..2484
DNA (2106bp) protein (702aa)
spoT; guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC:3.1.7.2) Tax=RifCSPlowO2_12_Pseudomonas_60_38_curated
spoT; guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC:3.1.7.2)
Guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase n=5 Tax=Pseudomonas RepID=I2BU08_PSEFL
RIFCSPLOWO2_12_FULL_Pseudomonas_fluorescens_59_450_rifcsplowo2_12_scaffold_3986_3
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2509..2889
DNA (381bp) protein (127aa)
Uncharacterized protein n=10 Tax=Pseudomonas RepID=C3K484_PSEFS
Bona fide RidA/YjgF/TdcF/RutC subgroup
Endoribonuclease L-PSP {ECO:0000313|EMBL:EFQ60508.1}; TaxID=746360 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluores
RIFCSPLOWO2_12_FULL_Pseudomonas_fluorescens_59_450_rifcsplowo2_12_scaffold_3986_4
RLO_Pseudomonas_60_38, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2946..3686
DNA (741bp) protein (247aa)
Lipoprotein, putative n=3 Tax=Pseudomonas RepID=I2BUU6_PSEFL
lipoprotein
lipoprotein Tax=RifCSPlowO2_12_Pseudomonas_60_38_curated
RIFCSPLOWO2_12_FULL_Pseudomonas_fluorescens_59_450_rifcsplowo2_12_scaffold_3986_5
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3812..4663)
DNA (852bp) protein (284aa)
NAD dependent epimerase/dehydratase family protein n=2 Tax=Pseudomonas RepID=I2BMG3_PSEFL
NAD dependent epimerase/dehydratase family protein
Uncharacterized protein {ECO:0000313|EMBL:AFJ55446.1}; TaxID=1037911 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluor
RIFCSPLOWO2_12_FULL_Pseudomonas_fluorescens_59_450_rifcsplowo2_12_scaffold_3986_6
RLO_Pseudomonas_60_38, Gammaproteobacteria, Proteobacteria, Bacteria

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4852..5835
DNA (984bp) protein (328aa)
TonB system transport protein ExbB n=1 Tax=Pseudomonas fluorescens A506 RepID=I2BKB7_PSEFL
exbB; TonB system transport protein ExbB Tax=RifCSPlowO2_12_Pseudomonas_60_38_curated
exbB; TonB system transport protein ExbB
RIFCSPLOWO2_12_FULL_Pseudomonas_fluorescens_59_450_rifcsplowo2_12_scaffold_3986_7
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5842..6267
DNA (426bp) protein (142aa)
Biopolymer transport protein n=7 Tax=Pseudomonas RepID=C3K488_PSEFS
biopolymer transporter ExbD
ExbD protein {ECO:0000313|EMBL:AFJ56938.1}; TaxID=1037911 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens A506
RIFCSPLOWO2_12_FULL_Pseudomonas_fluorescens_59_450_rifcsplowo2_12_scaffold_3986_8
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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6264..7010
DNA (747bp) protein (249aa)
Periplasmic energy transduction protein TonB n=3 Tax=Pseudomonas RepID=I4K2M1_PSEFL
Periplasmic energy transduction protein TonB {ECO:0000313|EMBL:EIK58961.1}; TaxID=1038924 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" sour
tonB; periplasmic energy transduction protein TonB
RIFCSPLOWO2_12_FULL_Pseudomonas_fluorescens_59_450_rifcsplowo2_12_scaffold_3986_9
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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7167..8087
DNA (921bp) protein (307aa)
Oxidative stress regulatory protein OxyR n=4 Tax=Pseudomonas RepID=I2BQC2_PSEFL
oxyR; oxidative stress regulatory protein OxyR
Oxidative stress regulatory protein OxyR {ECO:0000313|EMBL:EIK59665.1}; TaxID=1038924 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="
RIFCSPLOWO2_12_FULL_Pseudomonas_fluorescens_59_450_rifcsplowo2_12_scaffold_3986_10
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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8096..10171
DNA (2076bp) protein (692aa)
recG; ATP-dependent DNA helicase RecG (EC:3.6.1.-) rbh
ATP-dependent DNA helicase RecG {ECO:0000313|EMBL:EIK60077.1}; EC=3.6.1.- {ECO:0000313|EMBL:EIK60077.1};; TaxID=1038924 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudom
ATP-dependent DNA helicase RecG n=4 Tax=Pseudomonas RepID=I2BQD9_PSEFL
RIFCSPLOWO2_12_FULL_Pseudomonas_fluorescens_59_450_rifcsplowo2_12_scaffold_3986_11
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10249..11649
DNA (1401bp) protein (467aa)
HDOD domain protein n=2 Tax=Pseudomonas RepID=I2BSJ3_PSEFL
HDOD domain protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AFJ57226.1}; TaxID=1037911 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluor
RIFCSPLOWO2_12_FULL_Pseudomonas_fluorescens_59_450_rifcsplowo2_12_scaffold_3986_12
RLO_Pseudomonas_60_38, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(11779..12153)
DNA (375bp) protein (125aa)
Uncharacterized protein n=5 Tax=Pseudomonas RepID=I2BLL4_PSEFL
hypothetical protein Tax=RifCSPlowO2_12_Pseudomonas_60_38_curated
hypothetical protein
RIFCSPLOWO2_12_FULL_Pseudomonas_fluorescens_59_450_rifcsplowo2_12_scaffold_3986_13
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12278..13201)
DNA (924bp) protein (308aa)
Uncharacterized protein n=4 Tax=Pseudomonas RepID=S6H3P2_9PSED
tagQ; type VI secretion-associated lipoprotein TagQ rbh
Putative type VI secretion-associated lipoprotein TagQ {ECO:0000313|EMBL:EIK63799.1}; TaxID=1038924 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomon
RIFCSPLOWO2_12_FULL_Pseudomonas_fluorescens_59_450_rifcsplowo2_12_scaffold_3986_14
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13286..14998)
DNA (1713bp) protein (571aa)
Type VI secretion posttranslational regulatory protein TagR n=1 Tax=Pseudomonas fluorescens A506 RepID=I2BTG5_PSEFL
TagR protein {ECO:0000313|EMBL:AFJ57548.1}; TaxID=1037911 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens A506
tagR; type VI secretion posttranslational regulatory protein TagR rbh
RIFCSPLOWO2_12_FULL_Pseudomonas_fluorescens_59_450_rifcsplowo2_12_scaffold_3986_15
RLO_Pseudomonas_60_38, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14991..16175)
DNA (1185bp) protein (395aa)
Putative ABC transporter membrane protein n=1 Tax=Pseudomonas sp. CF150 RepID=S6KGA5_9PSED
tagS; Lol-like lipoprotein-translocating system, transmembrane protein TagS Tax=RifCSPlowO2_12_Pseudomonas_60_38_curated
tagS; Lol-like lipoprotein-translocating system, transmembrane protein TagS
RIFCSPLOWO2_12_FULL_Pseudomonas_fluorescens_59_450_rifcsplowo2_12_scaffold_3986_16
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16175..16879)
DNA (705bp) protein (235aa)
Putative Lol-like lipoprotein-translocating system, ATP-binding protein TagT n=2 Tax=Pseudomonas RepID=I2BWF7_PSEFL
tagT; Lol-like lipoprotein-translocating system, ATP-binding protein TagT
TagT protein {ECO:0000313|EMBL:AFJ58590.1}; TaxID=1037911 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens A506
RIFCSPLOWO2_12_FULL_Pseudomonas_fluorescens_59_450_rifcsplowo2_12_scaffold_3986_17
RLO_Pseudomonas_60_38, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16879..19857)
DNA (2979bp) protein (993aa)
PpkA-related protein n=1 Tax=Pseudomonas sp. CFT9 RepID=S6H272_9PSED
ppkA; serine/threonine protein kinase PpkA Tax=RifCSPlowO2_12_Pseudomonas_60_38_curated
ppkA; serine/threonine protein kinase PpkA
RIFCSPLOWO2_12_FULL_Pseudomonas_fluorescens_59_450_rifcsplowo2_12_scaffold_3986_18
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19854..20573)
DNA (720bp) protein (240aa)
Serine/threonine phosphoprotein phosphatase PppA n=4 Tax=Pseudomonas RepID=I2BL34_PSEFL
pppA; serine/threonine phosphoprotein phosphatase PppA rbh
PppA protein {ECO:0000313|EMBL:AFJ54967.1}; TaxID=1037911 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens A506
RIFCSPLOWO2_12_FULL_Pseudomonas_fluorescens_59_450_rifcsplowo2_12_scaffold_3986_19
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20574..21227)
DNA (654bp) protein (218aa)
Type VI secretion-associated protein TagF n=2 Tax=Pseudomonas RepID=I2BR75_PSEFL
tagF; type VI secretion-associated protein TagF
TagF protein {ECO:0000313|EMBL:AFJ56758.1}; TaxID=1037911 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens A506
RIFCSPLOWO2_12_FULL_Pseudomonas_fluorescens_59_450_rifcsplowo2_12_scaffold_3986_20
RLO_Pseudomonas_60_38, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21224..24721)
DNA (3498bp) protein (1166aa)
Uncharacterized protein n=1 Tax=Pseudomonas sp. CFT9 RepID=S6ICZ6_9PSED
tssM1; type VI secretion protein TssM1 Tax=RifCSPlowO2_12_Pseudomonas_60_38_curated
tssM1; type VI secretion protein TssM1 rbh
RIFCSPLOWO2_12_FULL_Pseudomonas_fluorescens_59_450_rifcsplowo2_12_scaffold_3986_21
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24721..26010)
DNA (1290bp) protein (430aa)
Type VI secretion protein TssL1 n=3 Tax=Pseudomonas RepID=I2BNV0_PSEFL
tssL1; type VI secretion protein TssL1 rbh
TssL1 protein {ECO:0000313|EMBL:AFJ55933.1}; TaxID=1037911 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens A50
RIFCSPLOWO2_12_FULL_Pseudomonas_fluorescens_59_450_rifcsplowo2_12_scaffold_3986_22
RLO_Pseudomonas_60_38, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26017..27351)
DNA (1335bp) protein (445aa)
Type VI secretion protein TssK1 n=2 Tax=Pseudomonas fluorescens RepID=I2BZP2_PSEFL
tssK1; type VI secretion protein TssK1 rbh
tssK1; type VI secretion protein TssK1 Tax=RifCSPlowO2_12_Pseudomonas_60_38_curated
RIFCSPLOWO2_12_FULL_Pseudomonas_fluorescens_59_450_rifcsplowo2_12_scaffold_3986_23
RLO_Pseudomonas_60_38, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27370..27879)
DNA (510bp) protein (170aa)
Putative lipoprotein n=2 Tax=Pseudomonas RepID=S6H3P8_9PSED
tssJ1; type VI secretion lipoprotein TssJ1 Tax=RifCSPlowO2_12_Pseudomonas_60_38_curated
tssJ1; type VI secretion lipoprotein TssJ1
RIFCSPLOWO2_12_FULL_Pseudomonas_fluorescens_59_450_rifcsplowo2_12_scaffold_3986_24
RLO_Pseudomonas_60_38, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27937..29265)
DNA (1329bp) protein (443aa)
Type VI secretion protein Fha1 n=2 Tax=Pseudomonas RepID=I2BXA6_PSEFL
fha1; type VI secretion protein Fha1 Tax=RifCSPlowO2_12_Pseudomonas_60_38_curated
fha1; type VI secretion protein Fha1 rbh
RIFCSPLOWO2_12_FULL_Pseudomonas_fluorescens_59_450_rifcsplowo2_12_scaffold_3986_25
RLO_Pseudomonas_60_38, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29659..30678
DNA (1020bp) protein (340aa)
Uncharacterized protein n=2 Tax=Pseudomonas RepID=S6ID01_9PSED
tssA1; type VI secretion protein TssA1 Tax=RifCSPlowO2_12_Pseudomonas_60_38_curated
tssA1; type VI secretion protein TssA1 rbh
RIFCSPLOWO2_12_FULL_Pseudomonas_fluorescens_59_450_rifcsplowo2_12_scaffold_3986_26
RLO_Pseudomonas_60_38, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30733..31239
DNA (507bp) protein (169aa)
Type VI secretion protein TssB1 n=5 Tax=Pseudomonas RepID=I2BRF5_PSEFL
tssB1; type VI secretion protein TssB1 Tax=RifCSPlowO2_12_Pseudomonas_60_38_curated
tssB1; type VI secretion protein TssB1
RIFCSPLOWO2_12_FULL_Pseudomonas_fluorescens_59_450_rifcsplowo2_12_scaffold_3986_27
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31242..32738
DNA (1497bp) protein (499aa)
Type VI secretion protein TssC1 n=4 Tax=Pseudomonas RepID=I2BPM0_PSEFL
tssC1; type VI secretion protein TssC1
TssC1 protein {ECO:0000313|EMBL:AFJ56203.1}; TaxID=1037911 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens A50
RIFCSPLOWO2_12_FULL_Pseudomonas_fluorescens_59_450_rifcsplowo2_12_scaffold_3986_28
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32894..33382
DNA (489bp) protein (163aa)
Type VI secretion system effector Hcp1 n=4 Tax=Pseudomonas RepID=I2BNU1_PSEFL
hcp1; type VI secretion system effector Hcp1
Type VI secretion system effector Hcp1 {ECO:0000313|EMBL:EIK61662.1}; TaxID=1038924 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Ps
RIFCSPLOWO2_12_FULL_Pseudomonas_fluorescens_59_450_rifcsplowo2_12_scaffold_3986_29
RLO_Pseudomonas_60_38, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33455..33970
DNA (516bp) protein (172aa)
Type VI secretion protein TssE1 n=4 Tax=Pseudomonas RepID=I2BZJ9_PSEFL
tssE1; type VI secretion protein TssE1 Tax=RifCSPlowO2_12_Pseudomonas_60_38_curated
tssE1; type VI secretion protein TssE1
RIFCSPLOWO2_12_FULL_Pseudomonas_fluorescens_59_450_rifcsplowo2_12_scaffold_3986_30
RLO_Pseudomonas_60_38, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33967..35826
DNA (1860bp) protein (620aa)
Type VI secretion protein, VC_A0110 family n=1 Tax=Pseudomonas sp. CF150 RepID=S6KG92_9PSED
tssF1; type VI secretion protein TssF1 Tax=RifCSPlowO2_12_Pseudomonas_60_38_curated
tssF1; type VI secretion protein TssF1
Displaying items 1-30 of 61 in total

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