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RIFOXYA2_FULL_CP_36_21_rifoxya2_full_scaffold_37

Search features with annotation key words

Displaying items 1-30 of 120 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFOXYA2_FULL_CP_36_21_rifoxya2_full_scaffold_37_1
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

101..313
DNA (213bp) protein (71aa)
Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
RIFOXYA2_FULL_CP_36_21_rifoxya2_full_scaffold_37_2
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(310..849)
DNA (540bp) protein (180aa)
mscC4; protein MscC4; K03442 small conductance mechanosensitive channel Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
MscS Mechanosensitive ion channel id=3572167 bin=GWF2_OP3_43_52 species=Saccharophagus degradans genus=Saccharophagus taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
mscC4; protein MscC4
RIFOXYA2_FULL_CP_36_21_rifoxya2_full_scaffold_37_3
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

988..1767
DNA (780bp) protein (260aa)
Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
RIFOXYA2_FULL_CP_36_21_rifoxya2_full_scaffold_37_4
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(1793..3121)
DNA (1329bp) protein (443aa)
Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
RIFOXYA2_FULL_CP_36_21_rifoxya2_full_scaffold_37_5
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(3264..5255)
DNA (1992bp) protein (664aa)
hypothetical protein n=1 Tax=Atribacteria bacterium SCGC AAA252-M02 RepID=UPI000382B969
DNA ligase, NAD-dependent Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
DNA ligase, NAD-dependent
RIFOXYA2_FULL_CP_36_21_rifoxya2_full_scaffold_37_6
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

5445..7772
DNA (2328bp) protein (776aa)
Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
RIFOXYA2_FULL_CP_36_21_rifoxya2_full_scaffold_37_7
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(7785..8543)
DNA (759bp) protein (253aa)
tRNA pseudouridine synthase B; K03177 tRNA pseudouridine55 synthase [EC:5.4.99.25] Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
tRNA pseudouridine synthase B n=1 Tax=Acetivibrio cellulolyticus RepID=UPI0001E2BE0A
tRNA pseudouridine synthase B
RIFOXYA2_FULL_CP_36_21_rifoxya2_full_scaffold_37_8
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(8593..9546)
DNA (954bp) protein (318aa)
phosphoesterase RecJ; K06881 phosphoesterase RecJ domain-containing protein Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
Phosphoesterase RecJ domain protein id=4554259 bin=GWC2_Deltaproteobacteria_42_51 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
phosphoesterase RecJ
RIFOXYA2_FULL_CP_36_21_rifoxya2_full_scaffold_37_9
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(9543..9890)
DNA (348bp) protein (116aa)
Ribosome-binding factor A n=1 Tax=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) RepID=RBFA_HALOH
rbfA; ribosome-binding factor A; K02834 ribosome-binding factor A Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
rbfA; ribosome-binding factor A
RIFOXYA2_FULL_CP_36_21_rifoxya2_full_scaffold_37_10
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(9887..11974)
DNA (2088bp) protein (696aa)
Translation initiation factor IF-2 n=1 Tax=Clostridium pasteurianum DSM 525 RepID=L7EQX6_CLOPA
initiation factor 2 Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
infB; translation initiation factor IF-2
RIFOXYA2_FULL_CP_36_21_rifoxya2_full_scaffold_37_11
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(11978..13060)
DNA (1083bp) protein (361aa)
transcription termination factor NusA; K02600 N utilization substance protein A Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
NusA antitermination factor id=1893590 bin=GWD2_RBX1-related_39_127 species=Clostridium thermocellum genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_RBX1-related_39_127 organism_group=RBX1 organism_desc=Same as F2_38_17
transcription termination factor NusA
RIFOXYA2_FULL_CP_36_21_rifoxya2_full_scaffold_37_12
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

13257..14603
DNA (1347bp) protein (449aa)
hypothetical protein Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
cro:ROD_20891 hypothetical protein id=125691 bin=ACD79 species=ACD79 genus=ACD79 taxon_order=ACD79 taxon_class=ACD79 phylum=Clamydiae tax=ACD79 organism_group=Chlamydiae organism_desc=Novel, branching deeply from Chlamydiae
hypothetical protein
RIFOXYA2_FULL_CP_36_21_rifoxya2_full_scaffold_37_13
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

14600..15928
DNA (1329bp) protein (443aa)
radical SAM protein Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
cro:ROD_20881 hypothetical protein id=127505 bin=ACD79 species=ACD79 genus=ACD79 taxon_order=ACD79 taxon_class=ACD79 phylum=Clamydiae tax=ACD79 organism_group=Chlamydiae organism_desc=Novel, branching deeply from Chlamydiae
radical SAM protein
RIFOXYA2_FULL_CP_36_21_rifoxya2_full_scaffold_37_14
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

15918..16658
DNA (741bp) protein (247aa)
hypothetical protein Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
Putative uncharacterized protein id=4197292 bin=GWF2_Lentisphaerae_57_35 species=Leptolyngbya sp. PCC 7375 genus=Leptolyngbya taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=GWF2_Lentisphaerae_57_35 organism_group=Lentisphaerae organism_desc=a459
hypothetical protein
RIFOXYA2_FULL_CP_36_21_rifoxya2_full_scaffold_37_15
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

16660..18303
DNA (1644bp) protein (548aa)
GH3 auxin-responsive promoter Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
GH3 auxin-responsive promoter id=4197294 bin=GWF2_Lentisphaerae_57_35 species=Chthoniobacter flavus genus=Chthoniobacter taxon_order=unknown taxon_class=Spartobacteria phylum=Verrucomicrobia tax=GWF2_Lentisphaerae_57_35 organism_group=Lentisphaerae organism_desc=a459
GH3 auxin-responsive promoter
RIFOXYA2_FULL_CP_36_21_rifoxya2_full_scaffold_37_16
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

18296..19414
DNA (1119bp) protein (373aa)
Putative uncharacterized protein n=1 Tax=bacterium Ellin514 RepID=B9XDZ5_9BACT id=127493 bin=ACD79 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=ACD79 organism_group=Chlamydiae organism_desc=Novel, branching deeply from Chlamydiae
hypothetical protein
Putative uncharacterized protein Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
RIFOXYA2_FULL_CP_36_21_rifoxya2_full_scaffold_37_17
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(19473..20837)
DNA (1365bp) protein (455aa)
Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
RIFOXYA2_FULL_CP_36_21_rifoxya2_full_scaffold_37_18
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(20834..22402)
DNA (1569bp) protein (523aa)
Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
RIFOXYA2_FULL_CP_36_21_rifoxya2_full_scaffold_37_19
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

22477..23889
DNA (1413bp) protein (471aa)
D-lactate dehydrogenase; K00102 D-lactate dehydrogenase (cytochrome) [EC:1.1.2.4] Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
D-lactate dehydrogenase (Cytochrome) n=1 Tax=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) RepID=B3QX64_CHLT3
D-lactate dehydrogenase
RIFOXYA2_FULL_CP_36_21_rifoxya2_full_scaffold_37_20
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

23962..28068
DNA (4107bp) protein (1369aa)
Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
RIFOXYA2_FULL_CP_36_21_rifoxya2_full_scaffold_37_21
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(28040..28864)
DNA (825bp) protein (275aa)
radical SAM protein; K04070 putative pyruvate formate lyase activating enzyme [EC:1.97.1.4] Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
radical SAM domain protein; K04070 putative pyruvate formate lyase activating enzyme [EC:1.97.1.4] id=24610475 bin=RAAC11 species=Clostridium intestinale genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RAAC11 organism_group=Unknown_CP
radical SAM protein
RIFOXYA2_FULL_CP_36_21_rifoxya2_full_scaffold_37_22
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(28849..30291)
DNA (1443bp) protein (481aa)
glgA-2; glycogen synthase; K00703 starch synthase [EC:2.4.1.21] Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
Glycogen synthase id=1750267 bin=GWE2_RBX1_39_32 species=Syntrophothermus lipocalidus genus=Syntrophothermus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
glgA-2; glycogen synthase
RIFOXYA2_FULL_CP_36_21_rifoxya2_full_scaffold_37_23
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(30345..32810)
DNA (2466bp) protein (822aa)
nucleotidyltransferase Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
Nucleotidyl transferase id=4834345 bin=GWC2_Deltaproteobacteria_42_51 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
nucleotidyltransferase
RIFOXYA2_FULL_CP_36_21_rifoxya2_full_scaffold_37_24
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(32887..34467)
DNA (1581bp) protein (527aa)
hypothetical protein Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
Putative uncharacterized protein id=2686539 bin=GWF2_OP9_related_35_9 species=Thermincola potens genus=Thermincola taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_OP9_related_35_9 organism_group=OP9 (Atribacteria)
hypothetical protein
RIFOXYA2_FULL_CP_36_21_rifoxya2_full_scaffold_37_25
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(34489..35490)
DNA (1002bp) protein (334aa)
hypothetical protein Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
Putative uncharacterized protein id=1937666 bin=GWB2_CP_45_9 species=Singulisphaera acidiphila genus=Singulisphaera taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWB2_CP_45_9 organism_group=Unknown_CP organism_desc=Sibling to OP3 based on rpS3
hypothetical protein
RIFOXYA2_FULL_CP_36_21_rifoxya2_full_scaffold_37_26
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(35536..36570)
DNA (1035bp) protein (345aa)
galactose-1-phosphate uridylyltransferase Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
Galactose-1-phosphate uridylyltransferase id=1750263 bin=GWE2_RBX1_39_32 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
galactose-1-phosphate uridylyltransferase
RIFOXYA2_FULL_CP_36_21_rifoxya2_full_scaffold_37_27
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(36587..38725)
DNA (2139bp) protein (713aa)
4-alpha-glucanotransferase n=1 Tax=Nitrospina gracilis 3/211 RepID=M1YXJ0_9BACT
4-alpha-glucanotransferase Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
4-alpha-glucanotransferase
RIFOXYA2_FULL_CP_36_21_rifoxya2_full_scaffold_37_28
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(38729..40879)
DNA (2151bp) protein (717aa)
amylopullulanase Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
Amylopullulanase id=4319235 bin=GWC2_Nitrospirae-rel_56_14 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
amylopullulanase
RIFOXYA2_FULL_CP_36_21_rifoxya2_full_scaffold_37_29
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

40938..41639
DNA (702bp) protein (234aa)
Bp26: periplasmic immunogenic protein n=1 Tax=Thermacetogenium phaeum (strain ATCC BAA-254 / DSM 12270 / PB) RepID=K4LJT8_THEPS
bp26: periplasmic immunogenic protein Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
bp26: periplasmic immunogenic protein
RIFOXYA2_FULL_CP_36_21_rifoxya2_full_scaffold_37_30
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(41620..41859)
DNA (240bp) protein (80aa)
hypothetical protein; K09131 hypothetical protein Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
UPF0235 protein Kcr_0466 id=3683886 bin=GWF2_Nitrospirae_44_13 species=Candidatus Korarchaeum cryptofilum genus=Candidatus Korarchaeum taxon_order=unknown taxon_class=unknown phylum=Korarchaeota tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
hypothetical protein
Displaying items 1-30 of 120 in total

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