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RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_281

Search features with annotation key words

Displaying items 1-30 of 58 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_281_1
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

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comp(2..76)
DNA (75bp) protein (25aa)
Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_281_2
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

435..2207
DNA (1773bp) protein (591aa)
tRNA uridine 5-carboxymethylaminomethyl modification protein MnmG; K03495 tRNA uridine 5-carboxymethylaminomethyl modification enzyme Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG id=1993337 bin=GWE2_RBX1_39_32 species=Caloramator australicus genus=Caloramator taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
tRNA uridine 5-carboxymethylaminomethyl modification protein MnmG
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_281_3
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(2306..2992)
DNA (687bp) protein (229aa)
id=3937492 Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
id=3937492 bin=GWF2_OP9_related_35_9 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_OP9_related_35_9 organism_group=OP9 (Atribacteria)
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_281_4
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(3054..4865)
DNA (1812bp) protein (604aa)
ABC transporter permease; K02026 multiple sugar transport system permease protein Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
binding-protein-dependent transport system inner membrane protein; K02026 multiple sugar transport system permease protein id=24610205 bin=RAAC11 species=Clostridium cellulovorans genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RAAC11 organism_group=Unknown_CP
ABC transporter permease
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_281_5
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(4928..5812)
DNA (885bp) protein (295aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Clostridium ultunense Esp RepID=M1Z5F0_9CLOT
binding-protein-dependent transport system inner membrane protein; K02025 multiple sugar transport system permease protein Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
binding-protein-dependent transport system inner membrane protein
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_281_6
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

6097..7287
DNA (1191bp) protein (397aa)
tuf1; elongation factor Tu; K02358 elongation factor Tu Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
Elongation factor Tu id=1749973 bin=GWE2_RBX1_39_32 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
tuf2; elongation factor Tu
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_281_7
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

7352..8626
DNA (1275bp) protein (425aa)
VanW family protein n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=A8MEY0_ALKOO
VanW family protein Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
VanW family protein
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_281_8
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

8595..9407
DNA (813bp) protein (271aa)
UDP-3-0-acyl N-acetylglucosamine deacetylase; K02535 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
hypothetical protein n=1 Tax=Aminicenantes bacterium SCGC AAA255-E10 RepID=UPI00035F7D3F
UDP-3-0-acyl N-acetylglucosamine deacetylase
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_281_9
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

9464..11572
DNA (2109bp) protein (703aa)
Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_281_10
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

11644..12174
DNA (531bp) protein (177aa)
Putative Histidine kinase, contains GAF domain Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
Putative Histidine kinase, contains GAF domain id=4185589 bin=GWF2_OP3_43_52 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_281_11
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

12247..14919
DNA (2673bp) protein (891aa)
Multi-sensor signal transduction histidine kinase n=1 Tax=Desulforudis audaxviator (strain MP104C) RepID=B1I2H3_DESAP
multi-sensor signal transduction histidine kinase Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
multi-sensor signal transduction histidine kinase
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_281_12
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

14972..16228
DNA (1257bp) protein (419aa)
3-isopropylmalate dehydratase (EC:4.2.1.33); K01703 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
3-isopropylmalate dehydratase (EC:4.2.1.33)
3-isopropylmalate dehydratase large subunit n=1 Tax=Syntrophomonas wolfei subsp. wolfei (strain DSM 2245B / Goettingen) RepID=Q0AZY9_SYNWW
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_281_13
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(16185..17849)
DNA (1665bp) protein (555aa)
Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_281_14
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(18261..18857)
DNA (597bp) protein (199aa)
Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_281_15
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

19012..19518
DNA (507bp) protein (169aa)
3-isopropylmalate dehydratase, small subunit; K01704 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
3-isopropylmalate dehydratase small subunit n=1 Tax=Syntrophothermus lipocalidus (strain DSM 12680 / TGB-C1) RepID=D7CKQ9_SYNLT
3-isopropylmalate dehydratase, small subunit
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_281_16
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

19515..19979
DNA (465bp) protein (155aa)
magnesium transporter MgtC n=1 Tax=Paenibacillus sp. JC66 RepID=UPI000288BE75
hypothetical protein; K07507 putative Mg2+ transporter-C (MgtC) family protein Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
hypothetical protein
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_281_17
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

19985..20848
DNA (864bp) protein (288aa)
miaA; tRNA delta(2)-isopentenylpyrophosphate transferase; K00791 tRNA dimethylallyltransferase [EC:2.5.1.75] Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
tRNA dimethylallyltransferase n=1 Tax=Dehalobacter sp. E1 RepID=UPI0002FC923F
miaA; tRNA delta(2)-isopentenylpyrophosphate transferase
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_281_18
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

20845..22059
DNA (1215bp) protein (405aa)
tRNA modifying protein; K14441 ribosomal protein S12 methylthiotransferase [EC:2.-.-.-] Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
Ribosomal protein S12 methylthiotransferase RimO n=1 Tax=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) RepID=RIMO_CARHZ
tRNA modifying protein
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_281_19
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

22161..22568
DNA (408bp) protein (136aa)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; K00995 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5] Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase n=1 Tax=Caloramator australicus RC3 RepID=I7LJL8_9CLOT
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_281_20
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

22577..23131
DNA (555bp) protein (185aa)
hypothetical protein n=1 Tax=Nitrospina sp. SCGC AAA288-L16 RepID=UPI00037FA54E
competence damage-inducible protein A; K03742 competence/damage-inducible protein CinA Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
competence damage-inducible protein A
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_281_21
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists


23186..24277
DNA (1092bp) protein (364aa)
Protein RecA n=1 Tax=Caloramator australicus RC3 RepID=I7KV16_9CLOT
recA protein; K03553 recombination protein RecA Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
recA protein
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_281_22
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

24307..25854
DNA (1548bp) protein (516aa)
Ribonuclease Y n=2 Tax=Desulfotomaculum RepID=F6B5Y8_DESCC
2,3 cyclic-nucleotide 2-phosphodiesterase; K06950 uncharacterized protein Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
2,3 cyclic-nucleotide 2-phosphodiesterase
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_281_23
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

25841..26677
DNA (837bp) protein (279aa)
hypothetical protein; K09769 hypothetical protein Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
metallophosphoesterase; K09769 hypothetical protein id=7201253 bin=TA06_GWE2_final species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=TA06_GWE2_final organism_group=TA06
hypothetical protein
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_281_24
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(26712..28010)
DNA (1299bp) protein (433aa)
Excinuclease ABC subunit C n=1 Tax=Uncultured termite group 1 bacterium phylotype Rs-D17 RepID=B1H0C4_UNCTG
excinuclease ABC subunit C ; K03703 excinuclease ABC subunit C Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
excinuclease ABC subunit C
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_281_25
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(28028..29293)
DNA (1266bp) protein (422aa)
Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Thermodesulfobacterium geofontis (strain OPB45) RepID=F8C4H2_THEGP
Fis family transcriptional regulator; K13599 two-component system, NtrC family, nitrogen regulation response regulator NtrX Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
Fis family transcriptional regulator
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_281_26
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(29441..30187)
DNA (747bp) protein (249aa)
type 12 methyltransferase; K02169 malonyl-CoA O-methyltransferase [EC:2.1.1.197] Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
Malonyl-[acyl-carrier protein] O-methyltransferase n=1 Tax=Bacillus methanolicus PB1 RepID=I3E5I9_BACMT
type 12 methyltransferase
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_281_27
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(30246..31574)
DNA (1329bp) protein (443aa)
hisD; histidinol dehydrogenase; K00013 histidinol dehydrogenase [EC:1.1.1.23] Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
Histidinol dehydrogenase n=2 Tax=Caldanaerobacter subterraneus RepID=HISX_THETN
hisD; histidinol dehydrogenase
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_281_28
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(31567..32646)
DNA (1080bp) protein (360aa)
Nucleoside-diphosphate-sugar pyrophosphorylase family protein; K00966 mannose-1-phosphate guanylyltransferase [EC:2.7.7.13]; K01840 phosphomannomutase [EC:5.4.2.8] Tax=RIFOXYA2_FULL_WOR_1_36_21_curate
Nucleoside-diphosphate-sugar pyrophosphorylase family protein n=1 Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8M199_CLOCD
Nucleoside-diphosphate-sugar pyrophosphorylase family protein
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_281_29
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(32639..33715)
DNA (1077bp) protein (359aa)
bifunctional phosphoglucose/phosphomannose isomerase (EC:5.3.1.8); K15916 glucose/mannose-6-phosphate isomerase [EC:5.3.1.9 5.3.1.8] Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
Bifunctional phosphoglucose/phosphomannose isomerase (EC:5.3.1.8 5.3.1.9)
Bifunctional phosphoglucose/phosphomannose isomerase n=1 Tax=Tepidanaerobacter acetatoxydans (strain DSM 21804 / JCM 16047 / Re1) RepID=F4LWH6_TEPAE
RIFOXYB2_FULL_CP_36_35_rifoxyb2_full_scaffold_281_30
RIFOXYA2_FULL_WOR_1_36_21_curated, WOR-1, Bacteria

Not on your lists

comp(33719..34894)
DNA (1176bp) protein (392aa)
carboxyl-terminal protease (EC:3.4.21.102); K03797 carboxyl-terminal processing protease [EC:3.4.21.102] Tax=RIFOXYA2_FULL_WOR_1_36_21_curated
carboxyl-terminal protease (EC:3.4.21.102); K03797 carboxyl-terminal processing protease [EC:3.4.21.102] id=24609779 bin=RAAC11 species=Deferribacter desulfuricans genus=Deferribacter taxon_order=Deferribacterales taxon_class=Deferribacteres phylum=Deferribacteres tax=RAAC11 organism_group=Unknown_CP
carboxyl-terminal protease (EC:3.4.21.102)
Displaying items 1-30 of 58 in total

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