ggKbase home page

rifcsplowo2_02_scaffold_59982

Search features with annotation key words

Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsplowo2_02_scaffold_59982_1
RIFOXYD1_FULL_Bdellovibrionales_53_11_curated, Bacteroivoracaceae, Bdellovibrionales, Bdellovibrio, Bacteria

Not on your lists

comp(87..1238)
DNA (1152bp) protein (384aa)
CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; K12452 CDP-6-deoxy-D-xylo-4-hexulose-3-dehydrase id=24609561 bin=RAAC11 species=Clostridium acetobutylicum genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RAAC11 organism_group=Unknown_CP rbh
CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; K12452 CDP-6-deoxy-D-xylo-4-hexulose-3-dehydrase Tax=RIFOXYD1_FULL_Bdellovibrionales_53_11_curated
CDP-4-keto-6-deoxy-D-glucose-3-dehydrase
rifcsplowo2_02_scaffold_59982_2
R_RIF_OD1_10_39_10, RIF-OD1-1, Parcubacteria, Bacteria

Not on your lists

comp(1250..2281)
DNA (1032bp) protein (344aa)
NAD-dependent epimerase/dehydratase; K01710 dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] Tax=RIFCSPLOWO2_02_RIF_OD1_10_39_10_curated
NAD dependent epimerase/dehydratase family protein id=24609560 bin=RAAC11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Parcubacteria tax=RAAC11 organism_group=Unknown_CP rbh
NAD-dependent epimerase/dehydratase
rifcsplowo2_02_scaffold_59982_3
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2271..2825)
DNA (555bp) protein (185aa)
transketolase central region (EC:1.2.4.1); K00162 pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] id=24609559 bin=RAAC11 species=unknown genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=RAAC11 organism_group=Unknown_CP
transketolase central region (EC:1.2.4.1); K00162 pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated
transketolase central region (EC:1.2.4.1)
rifcsplowo2_02_scaffold_59982_4
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2829..3443)
DNA (615bp) protein (205aa)
pyruvate dehydrogenase (EC:1.2.4.1)
acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha id=24609558 bin=RAAC11 species=unknown genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=RAAC11 organism_group=Unknown_CP rbh
pdhA; pyruvate dehydrogenase E1 alpha subunit Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated
rifcsplowo2_02_scaffold_59982_5
RBG_16_Planctomycetes_41_13_curated, Planctomycetes, Bacteria

Not on your lists

comp(3464..3610)
DNA (147bp) protein (49aa)
Histidinol-phosphate phosphatase family protein n=1 Tax=Leptospirillum ferriphilum (strain ML-04) RepID=J9ZBZ2_LEPFM
histidinol-phosphate phosphatase family protein Tax=RBG_16_Planctomycetes_41_13_curated
histidinol-phosphate phosphatase family protein
rifcsplowo2_02_scaffold_59982_6
GWD2_Elusimicrobia_63_28_curated, Elusimicrobia, Bacteria

Not on your lists

comp(3631..4140)
DNA (510bp) protein (170aa)
histidinol-phosphate phosphatase family protein Tax=GWD2_Elusimicrobia_63_28_curated
Histidinol-phosphate phosphatase family protein id=3217076 bin=GWA2_OP3_53_43 species=Leptospirillum ferriphilum genus=Leptospirillum taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_OP3_53_43 organism_group=OP3 (Omnitrophica) organism_desc=Was designated as curated version. Not curated. rp block places as OP3
histidinol-phosphate phosphatase family protein
rifcsplowo2_02_scaffold_59982_7
R_Elusimicrobia_61_10, Elusimicrobia, Bacteria

Not on your lists

comp(4165..5106)
DNA (942bp) protein (314aa)
nad dependent epimerase/dehydratase family Tax=RIFCSPHIGHO2_02_FULL_Elusimicrobia_61_10_curated
NAD-dependent epimerase/dehydratase id=2196701 bin=GWB2_Elusimicrobium_63_22 species=Methanoplanus petrolearius genus=Methanoplanus taxon_order=Methanomicrobiales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=GWB2_Elusimicrobium_63_22 organism_group=Elusimicrobia organism_desc=Good - rbh
nad dependent epimerase/dehydratase family
rifcsplowo2_02_scaffold_59982_8
R_Elusimicrobia_61_10, Elusimicrobia, Bacteria

Not on your lists

5217..6434
DNA (1218bp) protein (406aa)
Putative lipopolysaccharide o-antigen ligase transmembrane protein Tax=RIFCSPHIGHO2_02_FULL_Elusimicrobia_61_10_curated
Putative lipopolysaccharide o-antigen ligase transmembrane protein id=3137599 bin=GWC2_Elusimicrobia_64_44 species=Cupriavidus taiwanensis genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Elusimicrobia_64_44 organism_group=Elusimicrobia organism_desc=Good rbh
rifcsplowo2_02_scaffold_59982_9
RifOxyA12_full_Elusimicrobia_57_11_curated, Elusimicrobia, Bacteria

Not on your lists

comp(6431..6856)
DNA (426bp) protein (142aa)
exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase (EC:2.7.8.6)
sugar transferase Tax=RifOxyA12_full_Elusimicrobia_57_11_curated
Sugar transferase, PEP-CTERM system associated id=3137595 bin=GWC2_Elusimicrobia_64_44 species=ACD81 genus=ACD81 taxon_order=ACD81 taxon_class=ACD81 phylum=OD1 tax=GWC2_Elusimicrobia_64_44 organism_group=Elusimicrobia organism_desc=Good
rifcsplowo2_02_scaffold_59982_10
CG_Elusi_01, Elusimicrobia, Elusimicrobia, Bacteria

Not on your lists

comp(6822..7814)
DNA (993bp) protein (331aa)
sugar transferase Tax=CG_Elusi_01
Sugar transferase, PEP-CTERM system associated id=3137595 bin=GWC2_Elusimicrobia_64_44 species=ACD81 genus=ACD81 taxon_order=ACD81 taxon_class=ACD81 phylum=OD1 tax=GWC2_Elusimicrobia_64_44 organism_group=Elusimicrobia organism_desc=Good rbh
rifcsplowo2_02_scaffold_59982_11
R_Elusimicrobia_61_10, Elusimicrobia, Bacteria

Not on your lists

7938..8408
DNA (471bp) protein (157aa)
UDP-phosphate galactose phosphotransferase (EC:2.7.8.6) Tax=RIFCSPHIGHO2_02_FULL_Elusimicrobia_61_10_curated
exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase (EC:2.7.8.6)
Undecaprenyl-phosphate galactose phosphotransferase, WbaP id=4685340 bin=GWA2_Elusimicrobia_51_34 species=Thermosediminibacter oceani genus=Thermosediminibacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Elusimicrobia_51_34 organism_group=Elusimicrobia
Displaying 11 items

View Taxonomy