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400_zone1_2014_Ig3401_scaffold_2408

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
400_zone1_2014_Ig3401_scaffold_2408_1
CG_Woesearch_03, Woesearchaeota, Archaea

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comp(142..786)
DNA (645bp) protein (215aa)
LemA family protein; K03744 LemA protein id=5044346 bin=GW2011_AR5 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=GW2011_AR5 organism_group=Archaea organism_desc=gwa2_.48_18 Replace with curated version!
LemA family protein; K03744 LemA protein Tax=CG_Woesearch_03
LemA family protein
400_zone1_2014_Ig3401_scaffold_2408_2
Aciduliprofundum boonei, Aciduliprofundum, Euryarchaeota, Archaea

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920..1411
DNA (492bp) protein (164aa)
50S ribosomal protein L15e n=1 Tax=Aciduliprofundum boonei (strain DSM 19572 / T469) RepID=B5IFK8_ACIB4
ribosomal protein L15e
50S ribosomal protein L15e {ECO:0000256|HAMAP-Rule:MF_00256}; TaxID=439481 species="Archaea; Euryarchaeota; Aciduliprofundum.;" source="Aciduliprofundum boonei (strain DSM 19572 / T469).;"
400_zone1_2014_Ig3401_scaffold_2408_3
unknown

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comp(1414..1845)
DNA (432bp) protein (144aa)

This feature has no annotations

400_zone1_2014_Ig3401_scaffold_2408_4
unknown

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2236..2610
DNA (375bp) protein (125aa)

This feature has no annotations

400_zone1_2014_Ig3401_scaffold_2408_5
Archaeoglobus sulfaticallidus, Archaeoglobus, Archaeoglobales, Archaeoglobi, Euryarchaeota, Archaea

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2859..3815
DNA (957bp) protein (319aa)
50S ribosomal protein L3 n=1 Tax=Archaeoglobus sulfaticallidus PM70-1 RepID=N0B968_9EURY
50S ribosomal protein L3 {ECO:0000256|HAMAP-Rule:MF_01325, ECO:0000256|SAAS:SAAS00023038}; TaxID=387631 species="Archaea; Euryarchaeota; Archaeoglobi; Archaeoglobales; Archaeoglobaceae; Archaeoglobus.
LSU ribosomal protein L3P
400_zone1_2014_Ig3401_scaffold_2408_6
unknown

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3812..3997
DNA (186bp) protein (62aa)

This feature has no annotations

400_zone1_2014_Ig3401_scaffold_2408_7
unknown

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4144..4434
DNA (291bp) protein (97aa)

This feature has no annotations

400_zone1_2014_Ig3401_scaffold_2408_8

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4445..5245
DNA (801bp) protein (267aa)
50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L4P; K02930 large subunit ribosomal protein L4e id=18248294 bin=AR5_curated_draft species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
rpl4lp; 50S ribosomal protein L4P
400_zone1_2014_Ig3401_scaffold_2408_9
RBG_16_Micrarchaeota_36_9_curated, Micrarchaeota, Archaea

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5377..5697
DNA (321bp) protein (107aa)
rpl23P; 50S ribosomal protein L23P; K02892 large subunit ribosomal protein L23 Tax=RBG_16_Micrarchaeota_36_9_curated
large subunit ribosomal protein L23
50S ribosomal protein L23; K02892 large subunit ribosomal protein L23 id=5241352 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
400_zone1_2014_Ig3401_scaffold_2408_10
unknown

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5751..6092
DNA (342bp) protein (114aa)

This feature has no annotations

400_zone1_2014_Ig3401_scaffold_2408_11
RBG_16_Micrarchaeota_36_9_curated, Micrarchaeota, Archaea

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6129..6827
DNA (699bp) protein (233aa)
50S ribosomal protein L2 n=1 Tax=Ferroglobus placidus (strain DSM 10642 / AEDII12DO) RepID=D3RXT5_FERPA
LSU ribosomal protein l2p; K02886 large subunit ribosomal protein L2 Tax=RBG_16_Micrarchaeota_36_9_curated
ribosomal protein L2
400_zone1_2014_Ig3401_scaffold_2408_12
unknown

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6906..7172
DNA (267bp) protein (89aa)

This feature has no annotations

400_zone1_2014_Ig3401_scaffold_2408_13

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7184..7570
DNA (387bp) protein (129aa)
30S ribosomal protein S19P {ECO:0000256|HAMAP-Rule:MF_00531}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rps19p; 30S ribosomal protein S19; K02965 small subunit ribosomal protein S19 id=5044365 bin=GW2011_AR5 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=GW2011_AR5 organism_group=Archaea organism_desc=gwa2_.48_18 Replace with curated version!
rps19p; 30S ribosomal protein S19
400_zone1_2014_Ig3401_scaffold_2408_14
RBG_16_Micrarchaeota_36_9_curated, Micrarchaeota, Archaea

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7753..8211
DNA (459bp) protein (153aa)
50S ribosomal protein L22P Tax=RBG_16_Micrarchaeota_36_9_curated
50S ribosomal protein L22P id=4909361 bin=PER_GWC2_41_7 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
400_zone1_2014_Ig3401_scaffold_2408_15
RBG_16_Micrarchaeota_36_9_curated, Micrarchaeota, Archaea

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8299..8958
DNA (660bp) protein (220aa)
30S ribosomal protein S3 n=1 Tax=Methanobacterium sp. (strain SWAN-1) RepID=F6D7L2_METSW
30S ribosomal protein S3; K02982 small subunit ribosomal protein S3 Tax=RBG_16_Micrarchaeota_36_9_curated
30S ribosomal protein S3
400_zone1_2014_Ig3401_scaffold_2408_16
Methanotorris igneus, Methanotorris, Methanococcales, Methanococci, Euryarchaeota, Archaea

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9004..9213
DNA (210bp) protein (70aa)
50S ribosomal protein L29P n=1 Tax=Methanotorris igneus (strain DSM 5666 / JCM 11834 / Kol 5) RepID=F6BD94_METIK
50S ribosomal protein L29
50S ribosomal protein L29P {ECO:0000256|HAMAP-Rule:MF_00374}; TaxID=880724 species="Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanocaldococcaceae; Methanotorris.;" source="Methanotorris
400_zone1_2014_Ig3401_scaffold_2408_17
RBG_16_Micrarchaeota_36_9_curated, Micrarchaeota, Archaea

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9225..9560
DNA (336bp) protein (112aa)
Protein translation factor SUI1 homolog n=1 Tax=Methanocaldococcus infernus (strain DSM 11812 / JCM 15783 / ME) RepID=D5VRU5_METIM
translation initiation factor SUI1; K03113 translation initiation factor 1 Tax=RBG_16_Micrarchaeota_36_9_curated
translation initiation factor SUI1
400_zone1_2014_Ig3401_scaffold_2408_18
unknown

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9588..9662
DNA (75bp) protein (25aa)

This feature has no annotations

Displaying 18 items

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