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64_002_scaffold_85

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Displaying items 1-30 of 62 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
64_002_scaffold_85_1
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4..360)
DNA (357bp) protein (119aa)
50S ribosomal protein L20 n=12 Tax=Enterobacteriaceae RepID=C1M3V9_9ENTR
rplT; 50S ribosomal protein L20
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=1432557 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli ISC11.;"
64_002_scaffold_85_2
Enterobacter sp. MGH 24, Enterobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(416..613)
DNA (198bp) protein (66aa)
50S ribosomal protein L35 n=16 Tax=Enterobacteriaceae RepID=G8LL96_ENTCL
50S ribosomal protein L35
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; TaxID=1329828 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex.;" source="Enterobacter sp. MGH 24.;"
64_002_scaffold_85_3
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(710..1153)
DNA (444bp) protein (148aa)
Translation initiation factor IF-3 n=9 Tax=Enterobacteriaceae RepID=C1M3V7_9ENTR
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080, ECO:0000256|RuleBase:RU000646}; TaxID=1439318 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii MGH 56.;"
translation initiation factor IF-3
64_002_scaffold_85_4
Salmonella enterica, Salmonella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1271..1507)
DNA (237bp) protein (79aa)
thrS; threonyl-tRNA synthetase (EC:6.1.1.3)
Threonine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033}; EC=6.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033};; Threonyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00184}; TaxID=1194155 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Salmonella.;" source="Salmonella enterica subsp. enterica serovar London str. CFSAN001081.;"
Threonine--tRNA ligase n=1 Tax=Salmonella enterica subsp. enterica serovar Agona str. 57.A.08 RepID=N1GWY2_SALET
64_002_scaffold_85_5
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1640..3025)
DNA (1386bp) protein (462aa)
Threonine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033}; EC=6.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033};; Threonyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00184}; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-172-05_S1_C1.;"
thrS; threonine--tRNA ligase (EC:6.1.1.3)
Threonine--tRNA ligase n=5 Tax=Citrobacter RepID=C1M3V6_9ENTR
64_002_scaffold_85_6
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3330..3437
DNA (108bp) protein (36aa)
Transmembrane anchor protein n=9 Tax=Citrobacter RepID=J1FXJ4_9ENTR
Uncharacterized protein {ECO:0000313|EMBL:ETX64587.1}; TaxID=1400137 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 32.;"
hypothetical protein
64_002_scaffold_85_7
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3602..4360)
DNA (759bp) protein (253aa)
Uncharacterized protein n=2 Tax=Citrobacter freundii RepID=K8QUC3_CITFR
Membrane protein {ECO:0000313|EMBL:KJC12552.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
membrane protein
64_002_scaffold_85_8
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4648..5577
DNA (930bp) protein (310aa)
6-phosphofructokinase (EC:2.7.1.11)
Phosphofructokinase n=1 Tax=Citrobacter freundii GTC 09479 RepID=M3D6H9_CITFR
Phosphofructokinase {ECO:0000256|PIRNR:PIRNR000535}; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-172-05_S1_C1.;"
64_002_scaffold_85_9
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5847..6707
DNA (861bp) protein (287aa)
Phosphotransferase kinase n=4 Tax=Citrobacter RepID=J0LZN1_9ENTR
Fructosamine kinase {ECO:0000313|EMBL:ETX64584.1}; TaxID=1400137 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 32.;"
hypothetical protein
64_002_scaffold_85_10
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6772..7335)
DNA (564bp) protein (188aa)
Uncharacterized protein n=1 Tax=Citrobacter sp. 30_2 RepID=C1M3V1_9ENTR
Regulatory protein {ECO:0000313|EMBL:ETX64583.1}; TaxID=1400137 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 32.;"
membrane protein
64_002_scaffold_85_11
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7476..8144
DNA (669bp) protein (223aa)
Phosphatase YniC n=3 Tax=Citrobacter RepID=J1FXI9_9ENTR
2-deoxyglucose-6-phosphatase {ECO:0000313|EMBL:KJC12556.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
2-deoxyglucose-6-phosphatase
64_002_scaffold_85_12
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8292..9053
DNA (762bp) protein (254aa)
2-deoxy-D-gluconate 3-dehydrogenase {ECO:0000313|EMBL:KEL82327.1}; EC=1.1.1.125 {ECO:0000313|EMBL:KEL82327.1};; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-172-05_S1_C1.;"
Uncharacterized protein n=3 Tax=Citrobacter RepID=K8QUC1_CITFR
2-deoxy-D-gluconate 3-dehydrogenase
64_002_scaffold_85_13
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9149..9736
DNA (588bp) protein (196aa)
Uncharacterized protein n=2 Tax=Citrobacter RepID=R1FI89_CITFR
Inner membrane protein ydjM {ECO:0000313|EMBL:ETX70661.1}; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
hypothetical protein
64_002_scaffold_85_14
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9872..11263
DNA (1392bp) protein (464aa)
L-cystine uptake protein tcyP Transporter of cystine tcyP n=1 Tax=Citrobacter freundii GTC 09479 RepID=M3BNH4_CITFR
L-cystine transporter tcyP {ECO:0000313|EMBL:KJC12559.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
L-cystine transporter tcyP
64_002_scaffold_85_15
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11327..11566)
DNA (240bp) protein (80aa)
Cell division activator CedA n=5 Tax=Citrobacter RepID=J0VL01_9ENTR
Cell division modulator {ECO:0000313|EMBL:KJC12560.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
cell division modulator
64_002_scaffold_85_16
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11783..14041
DNA (2259bp) protein (753aa)
Catalase {ECO:0000256|RuleBase:RU000498}; EC=1.11.1.6 {ECO:0000256|RuleBase:RU000498};; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
katE; hydroperoxidase (EC:1.11.1.6)
Catalase n=1 Tax=Citrobacter freundii GTC 09479 RepID=M3DUQ8_CITFR
64_002_scaffold_85_17
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14079..14837)
DNA (759bp) protein (253aa)
Chitooligosaccharide deacetylase {ECO:0000256|HAMAP-Rule:MF_01246}; Short=COD {ECO:0000256|HAMAP-Rule:MF_01246};; EC=3.5.1.105 {ECO:0000256|HAMAP-Rule:MF_01246};; Chitin disaccharide deacetylase {ECO:0000256|HAMAP-Rule:MF_01246}; Chitobiose deacetylase {ECO:0000256|HAMAP-Rule:MF_01246}; Chitobiose-6P deacetylase {ECO:0000256|HAMAP-Rule:MF_01246}; Chitotriose deacetylase {ECO:0000256|HAMAP-Rule:MF_01246}; Chitotriose-6P deacetylase {ECO:0000256|HAMAP-Rule:MF_01246}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
UPF0249 protein H262_00100 n=1 Tax=Citrobacter freundii GTC 09479 RepID=M3DW03_CITFR
hypothetical protein
64_002_scaffold_85_18
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14850..16205)
DNA (1356bp) protein (452aa)
6-phospho-beta-glucosidase n=3 Tax=Citrobacter RepID=J0LZM4_9ENTR
Diacetylchitobiose-6-phosphate hydrolase {ECO:0000313|EMBL:KJC12563.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
diacetylchitobiose-6-phosphate hydrolase
64_002_scaffold_85_19
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16330..17169)
DNA (840bp) protein (280aa)
HTH-type transcriptional regulator ChbR n=6 Tax=Citrobacter RepID=C1M3U2_9ENTR
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:KKC62455.1}; TaxID=35703 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus.;"
64_002_scaffold_85_20
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17183..17530)
DNA (348bp) protein (116aa)
PTS system, chitobiose-specific IIA component {ECO:0000313|EMBL:CDL39935.1}; EC=2.7.1.69 {ECO:0000313|EMBL:CDL39935.1};; TaxID=1432557 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli ISC11.;"
PEP-dependent phosphotransferase enzyme III n=8 Tax=Citrobacter RepID=J1FXH8_9ENTR
PTS system N,N'-diacetylchitobiose-specific transporter subunit IIA
64_002_scaffold_85_21
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17585..18943)
DNA (1359bp) protein (453aa)
N,N'-diacetylchitobiose permease IIC component n=9 Tax=Citrobacter RepID=C1M3U0_9ENTR
Permease IIC component {ECO:0000256|PIRNR:PIRNR006351}; TaxID=1400137 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 32.;"
PTS system N,N'-diacetylchitobiose-specific transporter subunit IIC
64_002_scaffold_85_22
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19031..19351)
DNA (321bp) protein (107aa)
chbB; PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB (EC:2.7.1.69)
PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB n=3 Tax=Citrobacter RepID=K8QUB4_CITFR
PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB {ECO:0000313|EMBL:KJC09202.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
64_002_scaffold_85_23
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19650..19991)
DNA (342bp) protein (114aa)
Osmotically-inducible lipoprotein E n=12 Tax=Enterobacteriaceae RepID=C1M3T7_9ENTR
Transcriptional regulator {ECO:0000313|EMBL:KJC09201.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
osmE; osmotically-inducible lipoprotein E precursor
64_002_scaffold_85_24
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20192..21022
DNA (831bp) protein (277aa)
NH(3)-dependent NAD(+) synthetase {ECO:0000256|HAMAP-Rule:MF_00193, ECO:0000256|RuleBase:RU003812}; EC=6.3.1.5 {ECO:0000256|HAMAP-Rule:MF_00193, ECO:0000256|RuleBase:RU003812};; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
nadE; NAD synthetase (EC:6.3.1.5)
NH(3)-dependent NAD(+) synthetase n=2 Tax=Citrobacter RepID=J0MAU1_9ENTR
64_002_scaffold_85_25
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21154..22041
DNA (888bp) protein (296aa)
Nucleotide excision repair endonuclease n=4 Tax=Citrobacter RepID=J0VWP9_9ENTR
Nucleotide excision repair endonuclease {ECO:0000313|EMBL:KJC12570.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
nucleotide excision repair endonuclease
64_002_scaffold_85_26
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22001..22576)
DNA (576bp) protein (192aa)
Protein Ves n=5 Tax=Citrobacter RepID=J1G834_9ENTR
Protein Ves {ECO:0000256|HAMAP-Rule:MF_01591}; TaxID=1432557 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli ISC11.;"
hypothetical protein
64_002_scaffold_85_27
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22930..23415)
DNA (486bp) protein (162aa)
Spheroplast protein Y n=7 Tax=Citrobacter RepID=J0M418_9ENTR
Spheroplast protein Y {ECO:0000313|EMBL:ETX70646.1}; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
hypothetical protein
64_002_scaffold_85_28
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23765..24730)
DNA (966bp) protein (322aa)
Succinylglutamate desuccinylase {ECO:0000256|HAMAP-Rule:MF_00767, ECO:0000256|SAAS:SAAS00036677}; EC=3.5.1.96 {ECO:0000256|HAMAP-Rule:MF_00767, ECO:0000256|SAAS:SAAS00036667};; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-172-05_S1_C1.;"
Succinylglutamate desuccinylase n=1 Tax=Citrobacter freundii GTC 09479 RepID=M3D6G4_CITFR
succinylglutamate desuccinylase
64_002_scaffold_85_29
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24723..26066)
DNA (1344bp) protein (448aa)
N-succinylarginine dihydrolase {ECO:0000256|HAMAP-Rule:MF_01172, ECO:0000256|SAAS:SAAS00074425}; EC=3.5.3.23 {ECO:0000256|HAMAP-Rule:MF_01172, ECO:0000256|SAAS:SAAS00074418};; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
succinylarginine dihydrolase (EC:3.5.3.23)
N-succinylarginine dihydrolase n=1 Tax=Citrobacter freundii ATCC 8090 = MTCC 1658 RepID=K8QXU8_CITFR
64_002_scaffold_85_30
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26063..27541)
DNA (1479bp) protein (493aa)
N-succinylglutamate 5-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01174}; EC=1.2.1.71 {ECO:0000256|HAMAP-Rule:MF_01174};; Succinylglutamic semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01174}; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-172-05_S1_C1.;"
N-succinylglutamate 5-semialdehyde dehydrogenase n=1 Tax=Citrobacter freundii GTC 09479 RepID=M3CMS3_CITFR
astD; succinylglutamate-semialdehyde dehydrogenase
Displaying items 1-30 of 62 in total

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