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64_003_scaffold_166

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
64_003_scaffold_166_1
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(200..1390)
DNA (1191bp) protein (397aa)
HlyD family type I secretion membrane fusion protein n=6 Tax=Citrobacter RepID=C1MAA5_9ENTR
HlyD family type I secretion membrane fusion protein {ECO:0000313|EMBL:ETX69950.1}; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
siiDB; HlyD family secretion type I protein; K12542 membrane fusion protein LapC
64_003_scaffold_166_2
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1371..3557)
DNA (2187bp) protein (729aa)
Protein secretion abc efflux permease and atp-binding protein n=3 Tax=Citrobacter RepID=J0VIY9_9ENTR
ATP-binding protein {ECO:0000313|EMBL:KJC07280.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
type I secretion protein, ATP-binding protein; K12541 ATP-binding cassette, subfamily C, bacterial LapB
64_003_scaffold_166_3
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3554..4963)
DNA (1410bp) protein (470aa)
Type I secretion outer membrane protein TolC family n=1 Tax=Citrobacter freundii ATCC 8090 = MTCC 1658 RepID=K8R092_CITFR
Type I secretion outer membrane , TolC family protein {ECO:0000313|EMBL:KEL78391.1}; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-172-05_S1_C1.;"
TolC family type I secretion outer membrane protein
64_003_scaffold_166_4
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5064..16268)
DNA (11205bp) protein (3735aa)
Uncharacterized protein n=1 Tax=Citrobacter sp. KTE30 RepID=R8UND5_9ENTR
Large repetitive protein {ECO:0000313|EMBL:KJC07278.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
outer membrane adhesin like protein
64_003_scaffold_166_5
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16852..17334)
DNA (483bp) protein (161aa)
SsrA-binding protein n=13 Tax=Enterobacteriaceae RepID=C1MAA1_9ENTR
SsrA-binding protein {ECO:0000256|HAMAP-Rule:MF_00023, ECO:0000256|SAAS:SAAS00023472}; TaxID=1400137 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 32.;"
smpB; SsrA-binding protein; K03664 SsrA-binding protein
64_003_scaffold_166_6
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17489..17932
DNA (444bp) protein (148aa)
Polyketide cyclase dehydrase and lipid transport family protein n=7 Tax=Citrobacter RepID=J1FVX2_9ENTR
Uncharacterized protein {ECO:0000313|EMBL:ETX69945.1}; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
hypothetical protein
64_003_scaffold_166_7
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17916..18212
DNA (297bp) protein (99aa)
Protein RnfH 2 n=5 Tax=Enterobacteriaceae RepID=I6GYH4_SHIFL
UPF0125 protein P834_07805 {ECO:0000256|HAMAP-Rule:MF_00460}; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
hypothetical protein; K09801 hypothetical protein
64_003_scaffold_166_8
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18263..18607)
DNA (345bp) protein (115aa)
Outer membrane protein assembly factor BamE n=6 Tax=Enterobacteriaceae RepID=G9SAP5_CITFR
Outer membrane protein assembly factor BamE {ECO:0000256|HAMAP-Rule:MF_00925}; Flags: Precursor;; TaxID=1333848 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii CFNIH1.;"
hypothetical protein; K06186 small protein A
64_003_scaffold_166_9
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18757..20418)
DNA (1662bp) protein (554aa)
DNA repair protein RecN n=1 Tax=Citrobacter freundii RepID=C1IG41_CITFR
DNA repair protein RecN {ECO:0000256|PIRNR:PIRNR003128}; Recombination protein N {ECO:0000256|PIRNR:PIRNR003128}; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-172-05_S1_C1.;"
recombination and repair protein; K03631 DNA repair protein RecN (Recombination protein N)
64_003_scaffold_166_10
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20504..21382)
DNA (879bp) protein (293aa)
NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037468}; EC=2.7.1.23 {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037533};; ATP-dependent NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361}; TaxID=1432557 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli ISC11.;"
NAD kinase (EC:2.7.1.23); K00858 NAD+ kinase [EC:2.7.1.23]
Probable inorganic polyphosphate/ATP-NAD kinase n=6 Tax=Citrobacter RepID=J0LYA5_9ENTR
64_003_scaffold_166_11
Citrobacter sp. KTE151, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21505..22098
DNA (594bp) protein (198aa)
Protein GrpE n=8 Tax=Citrobacter RepID=J1FVX8_9ENTR
Protein GrpE {ECO:0000256|HAMAP-Rule:MF_01151}; HSP-70 cofactor {ECO:0000256|HAMAP-Rule:MF_01151}; TaxID=1169322 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. KTE151.;"
molecular chaperone GrpE (heat shock protein)
64_003_scaffold_166_12
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22148..23437)
DNA (1290bp) protein (430aa)
UPF0053 inner membrane protein yfjD n=4 Tax=Citrobacter RepID=J0LS47_9ENTR
UPF0053 inner membrane protein yfjD {ECO:0000313|EMBL:KDF13457.1}; TaxID=1439318 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii MGH 56.;"
yfjD; hypothetical protein
64_003_scaffold_166_13
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23456..24247)
DNA (792bp) protein (264aa)
Inner membrane protein ypjD n=10 Tax=Citrobacter RepID=C1MA93_9ENTR
Inner membrane protein ypjD {ECO:0000313|EMBL:ETX69938.1}; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
hypothetical protein
64_003_scaffold_166_14
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


24413..25774
DNA (1362bp) protein (454aa)
Signal recognition particle protein n=8 Tax=Citrobacter RepID=C1MA92_9ENTR
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
signal recognition particle protein; K03106 signal recognition particle subunit SRP54
64_003_scaffold_166_15
Citrobacter werkmanii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


26028..26276
DNA (249bp) protein (83aa)
30S ribosomal protein S16 n=12 Tax=Enterobacteriaceae RepID=D4BHQ5_9ENTR
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=1114921 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter werkmanii NBRC 105721.;"
rpsP; 30S ribosomal protein S16; K02959 small subunit ribosomal protein S16
64_003_scaffold_166_16
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26295..26843
DNA (549bp) protein (183aa)
Ribosome maturation factor RimM n=10 Tax=Citrobacter RepID=C1MA90_9ENTR
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; TaxID=1400137 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 32.;"
rimM; 16S rRNA-processing protein RimM; K02860 16S rRNA processing protein RimM
64_003_scaffold_166_17
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26888..27649
DNA (762bp) protein (254aa)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464};; M1G-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; tRNA [GM37] methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-172-05_S1_C1.;"
trmD; tRNA (guanine-N(1)-)-methyltransferase (EC:2.1.1.31); K00554 tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
tRNA (guanine-N(1)-)-methyltransferase n=7 Tax=Citrobacter RepID=C1MA89_9ENTR
64_003_scaffold_166_18
Enterobacter aerogenes, Enterobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


27689..27964
DNA (276bp) protein (92aa)
50S ribosomal protein L19 n=203 Tax=Bacteria RepID=RL19_CROS8
LSU ribosomal protein L19P
50S ribosomal protein L19 {ECO:0000256|HAMAP-Rule:MF_00402, ECO:0000256|RuleBase:RU000559}; TaxID=1400138 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Enterobacter.;" source="Enterobacter aerogenes UCI 15.;"
64_003_scaffold_166_19
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28096..28578)
DNA (483bp) protein (161aa)
Outer membrane lipoprotein n=3 Tax=Citrobacter RepID=K8QRW8_CITFR
Outer membrane lipoprotein {ECO:0000313|EMBL:ETX69932.1}; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
putative outer membrane lipoprotein
64_003_scaffold_166_20
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28591..29817)
DNA (1227bp) protein (409aa)
Inner membrane diguanylate cyclase n=3 Tax=Citrobacter RepID=K8QWJ3_CITFR
Diguanylate cyclase {ECO:0000313|EMBL:KJC12987.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
hypothetical protein
64_003_scaffold_166_21
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29810..30328)
DNA (519bp) protein (173aa)
Periplasmic protein n=5 Tax=Citrobacter RepID=J1FVY8_9ENTR
Uncharacterized protein {ECO:0000313|EMBL:KEL78373.1}; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-172-05_S1_C1.;"
hypothetical protein
64_003_scaffold_166_22
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30487..30861)
DNA (375bp) protein (125aa)
Lipoprotein n=1 Tax=Citrobacter freundii ATCC 8090 = MTCC 1658 RepID=K8QN83_CITFR
Lipoprotein {ECO:0000313|EMBL:KJC12985.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
hypothetical protein
64_003_scaffold_166_23
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31076..32146
DNA (1071bp) protein (357aa)
Phospho-2-dehydro-3-deoxyheptonate aldolase {ECO:0000256|PIRNR:PIRNR001361}; EC=2.5.1.54 {ECO:0000256|PIRNR:PIRNR001361};; 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase {ECO:0000256|PIRNR:PIRNR001361}; DAHP synthase {ECO:0000256|PIRNR:PIRNR001361}; Phospho-2-keto-3-deoxyheptonate aldolase {ECO:0000256|PIRNR:PIRNR001361}; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii
aroF; phospho-2-dehydro-3-deoxyheptonate aldolase (EC:2.5.1.54); K01626 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
Phospho-2-dehydro-3-deoxyheptonate aldolase n=6 Tax=Citrobacter RepID=G9SAR0_CITFR
64_003_scaffold_166_24
Citrobacter werkmanii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32157..33278
DNA (1122bp) protein (374aa)
tyrA; T-protein [includes: chorismate mutase; prephenate dehydrogenase] (EC:1.3.1.12 5.4.99.5); K14187 chorismate mutase / prephenate dehydrogenase [EC:5.4.99.5 1.3.1.12]
T-protein n=2 Tax=Citrobacter RepID=C1MA79_9ENTR
T-protein {ECO:0000256|PIRNR:PIRNR001499}; TaxID=1114921 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter werkmanii NBRC 105721.;"
64_003_scaffold_166_25
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33375..34535)
DNA (1161bp) protein (387aa)
Chorismate mutase {ECO:0000313|EMBL:KJC07258.1}; EC=4.2.1.51 {ECO:0000313|EMBL:KJC07258.1};; EC=5.4.99.5 {ECO:0000313|EMBL:KJC07258.1};; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
pheA; bifunctional chorismate mutase/prephenate dehydratase; K14170 chorismate mutase / prephenate dehydratase [EC:5.4.99.5 4.2.1.51]
Bifunctional chorismate mutase/prephenate dehydratase n=2 Tax=Citrobacter RepID=K8QWJ8_CITFR
64_003_scaffold_166_26
Citrobacter youngae, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34786..35124)
DNA (339bp) protein (113aa)
Ribosome-associated inhibitor A n=11 Tax=Citrobacter RepID=C1MA77_9ENTR
Ribosomal subunit interface protein {ECO:0000313|EMBL:EFE07018.1}; TaxID=500640 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter youngae ATCC 29220.;"
translation inhibitor protein RaiA; K05809 ribosome-associated inhibitor A
64_003_scaffold_166_27
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35394..36131)
DNA (738bp) protein (246aa)
Outer membrane protein assembly factor BamD n=6 Tax=Citrobacter RepID=J0LS60_9ENTR
Outer membrane protein assembly factor BamD {ECO:0000256|HAMAP-Rule:MF_00922}; Flags: Precursor;; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
bamD; lipoprotein; K05807 putative lipoprotein
64_003_scaffold_166_28
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36263..37243
DNA (981bp) protein (327aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
rluD; 23S rRNA pseudouridine synthase D; K06180 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
Pseudouridine synthase n=6 Tax=Citrobacter RepID=J1FW59_9ENTR
64_003_scaffold_166_29
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37240..37971
DNA (732bp) protein (244aa)
Uncharacterized protein n=1 Tax=Citrobacter freundii GTC 09479 RepID=M3DLD7_CITFR
Laccase domain protein {ECO:0000256|RuleBase:RU361274}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
yfiH; hypothetical protein; K05810 conserved hypothetical protein
64_003_scaffold_166_30
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

38101..40674
DNA (2574bp) protein (858aa)
Protein disaggregation chaperone n=2 Tax=Citrobacter freundii RepID=K8QWK4_CITFR
Chaperone protein ClpB {ECO:0000256|RuleBase:RU362034}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
Chaperone protein ClpB
Displaying 30 items

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