ggKbase home page

64_003_scaffold_36

Search features with annotation key words

Displaying items 1-30 of 80 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
64_003_scaffold_36_1
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(187..1440)
DNA (1254bp) protein (418aa)
ackA; acetate kinase (EC:2.7.2.1); K00925 acetate kinase [EC:2.7.2.1]
Acetate kinase {ECO:0000255|HAMAP-Rule:MF_00020}; EC=2.7.2.1 {ECO:0000255|HAMAP-Rule:MF_00020};; Acetokinase {ECO:0000255|HAMAP-Rule:MF_00020}; TaxID=176280 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 12228).;"
Acetate kinase n=48 Tax=Staphylococcus epidermidis RepID=ACKA_STAEQ
64_003_scaffold_36_2
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(1529..2476)
DNA (948bp) protein (316aa)
hypothetical protein; K00571 site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]
Uncharacterized protein n=35 Tax=Staphylococcus epidermidis RepID=Q8CS59_STAES
Uncharacterized protein {ECO:0000313|EMBL:EFE59945.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
64_003_scaffold_36_3
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(2605..3099)
DNA (495bp) protein (165aa)
tpx; thiol peroxidase; K11065 thiol peroxidase, atypical 2-Cys peroxiredoxin [EC:1.11.1.15]
Probable thiol peroxidase {ECO:0000256|HAMAP-Rule:MF_00269}; EC=1.11.1.- {ECO:0000256|HAMAP-Rule:MF_00269};; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
Probable thiol peroxidase n=50 Tax=Staphylococcus epidermidis RepID=TPX_STAEQ
64_003_scaffold_36_4
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(3341..4105)
DNA (765bp) protein (255aa)
Uncharacterized protein n=46 Tax=Staphylococcus epidermidis RepID=Q5HNJ1_STAEQ
hypothetical protein; K07090
Uncharacterized protein {ECO:0000313|EMBL:EFE59943.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
64_003_scaffold_36_5
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(4145..5368)
DNA (1224bp) protein (408aa)
Probable tRNA sulfurtransferase {ECO:0000255|HAMAP-Rule:MF_00021}; EC=2.8.1.4 {ECO:0000255|HAMAP-Rule:MF_00021};; Sulfur carrier protein ThiS sulfurtransferase {ECO:0000255|HAMAP-Rule:MF_00021}; Thiamine biosynthesis protein ThiI {ECO:0000255|HAMAP-Rule:MF_00021}; tRNA 4-thiouridine synthase {ECO:0000255|HAMAP-Rule:MF_00021}; TaxID=176280 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 12228).;"
Probable tRNA sulfurtransferase n=47 Tax=Staphylococcus epidermidis RepID=THII_STAEQ
thiI; thiamine biosynthesis protein ThiI; K03151 thiamine biosynthesis protein ThiI
64_003_scaffold_36_6
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(5368..6507)
DNA (1140bp) protein (380aa)
aminotransferase class V; K04487 cysteine desulfurase [EC:2.8.1.7]
Aminotransferase, class V n=43 Tax=Staphylococcus epidermidis RepID=Q5HNI9_STAEQ
Aminotransferase, class V {ECO:0000313|EMBL:AAW54683.1}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
64_003_scaffold_36_7

Not on your lists

comp(6837..8531)
DNA (1695bp) protein (565aa)
Septation ring formation regulator EzrA n=29 Tax=Staphylococcus epidermidis RepID=EZRA_STAES
Septation ring formation regulator EzrA {ECO:0000313|EMBL:ETJ19436.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
septation ring formation regulator EzrA; K06286 septation ring formation regulator
64_003_scaffold_36_8
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

8666..9136
DNA (471bp) protein (157aa)
GAF domain protein n=49 Tax=Staphylococcus epidermidis RepID=Q5HNI7_STAEQ
hypothetical protein; K07170 GAF domain-containing protein
GAF domain protein {ECO:0000313|EMBL:AAW54685.1}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
64_003_scaffold_36_9
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


9357..9959
DNA (603bp) protein (201aa)
30S ribosomal protein S4 n=62 Tax=Staphylococcus epidermidis RepID=RS4_STAEQ
rpsD; 30S ribosomal protein S4; K02986 small subunit ribosomal protein S4
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
64_003_scaffold_36_10

Not on your lists

comp(10229..10975)
DNA (747bp) protein (249aa)
glycerophosphoryl diester phosphodiesterase; K01126 glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]
Glycerophosphoryl diester phosphodiesterase, putative n=50 Tax=Staphylococcus epidermidis RepID=Q5HNI4_STAEQ
Putative glycerophosphodiester phosphodiesterase {ECO:0000313|EMBL:ETJ19439.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
64_003_scaffold_36_11
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

11053..11493
DNA (441bp) protein (147aa)
OsmC/Ohr family protein n=54 Tax=Staphylococcus epidermidis RepID=Q5HNI3_STAEQ
OsmC/Ohr family protein
Peroxiredoxin, SACOL1771 subfamily {ECO:0000313|EMBL:EFE59936.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
64_003_scaffold_36_12
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

11620..12783
DNA (1164bp) protein (388aa)
aminotransferase class V; K00839 aminotransferase [EC:2.6.1.-]
Aminotransferase, class V n=49 Tax=Staphylococcus epidermidis RepID=Q5HNI2_STAEQ
Aminotransferase, class V {ECO:0000313|EMBL:AAW54690.1}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
64_003_scaffold_36_13
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

12773..14368
DNA (1596bp) protein (532aa)
serA; D-3-phosphoglycerate dehydrogenase (EC:1.1.1.95); K00058 D-3-phosphoglycerate dehydrogenase [EC:1.1.1.95]
D-3-phosphoglycerate dehydrogenase {ECO:0000313|EMBL:AAW54691.1}; EC=1.1.1.95 {ECO:0000313|EMBL:AAW54691.1};; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
D-3-phosphoglycerate dehydrogenase n=39 Tax=Staphylococcus epidermidis RepID=Q5HNI1_STAEQ
64_003_scaffold_36_14
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(14448..15572)
DNA (1125bp) protein (375aa)
Hydrolase, haloacid dehalogenase-like family n=45 Tax=Staphylococcus epidermidis RepID=Q5HNI0_STAEQ
HAD superfamily hydrolase
Hydrolase, haloacid dehalogenase-like family {ECO:0000313|EMBL:AAW54697.1}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
64_003_scaffold_36_15
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(15668..17140)
DNA (1473bp) protein (491aa)
PTS system, IIBC components; K02803 PTS system, N-acetylglucosamine-specific IIB component [EC:2.7.1.69]; K02804 PTS system, N-acetylglucosamine-specific IIC component
PTS system, IIBC components n=39 Tax=Staphylococcus epidermidis RepID=Q5HNH9_STAEQ
PTS system, IIBC components {ECO:0000313|EMBL:AAW54698.1}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
64_003_scaffold_36_16
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(17350..17973)
DNA (624bp) protein (208aa)
1-acyl-sn-glycerol-3-phosphate acyltransferase, putative n=48 Tax=Staphylococcus epidermidis RepID=Q5HNH8_STAEQ
1-acyl-sn-glycerol-3-phosphate acyltransferase
1-acyl-sn-glycerol-3-phosphate acyltransferase, putative {ECO:0000313|EMBL:AAW54699.1}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
64_003_scaffold_36_17
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

18253..19491
DNA (1239bp) protein (413aa)
serine protease HtrA; K01362 [EC:3.4.21.-]
Trypsin {ECO:0000313|EMBL:EFE59930.1}; EC=3.4.21.- {ECO:0000313|EMBL:EFE59930.1};; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
Serine protease HtrA, putative n=25 Tax=Staphylococcus epidermidis RepID=Q5HNH7_STAEQ
64_003_scaffold_36_18
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(19682..20947)
DNA (1266bp) protein (422aa)
tyrS; tyrosyl-tRNA synthetase (EC:6.1.1.1); K01866 tyrosyl-tRNA synthetase [EC:6.1.1.1]
Tyrosine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716}; EC=6.1.1.1 {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716};; Tyrosyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02006}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
Tyrosine--tRNA ligase n=53 Tax=Staphylococcus epidermidis RepID=SYY_STAEQ
64_003_scaffold_36_19
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

21351..22256
DNA (906bp) protein (302aa)
transglycosylase; K12551 transglycosylase [EC:2.4.1.-]
Transglycosylase domain protein n=49 Tax=Staphylococcus epidermidis RepID=Q5HNH5_STAEQ
Transglycosylase {ECO:0000313|EMBL:EFE59928.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
64_003_scaffold_36_20
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(22346..24013)
DNA (1668bp) protein (556aa)
Formate--tetrahydrofolate ligase {ECO:0000256|HAMAP-Rule:MF_01543}; EC=6.3.4.3 {ECO:0000256|HAMAP-Rule:MF_01543};; Formyltetrahydrofolate synthetase {ECO:0000256|HAMAP-Rule:MF_01543}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
fhs; formate--tetrahydrofolate ligase (EC:6.3.4.3); K01938 formate--tetrahydrofolate ligase [EC:6.3.4.3]
Formate--tetrahydrofolate ligase n=44 Tax=Staphylococcus epidermidis RepID=FTHS_STAEQ
64_003_scaffold_36_21
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(24433..25422)
DNA (990bp) protein (330aa)
Catabolite control protein A n=49 Tax=Staphylococcus epidermidis RepID=CCPA_STAEQ
ccpA; catabolite control protein A; K02529 LacI family transcriptional regulator
Catabolite control protein A {ECO:0000313|EMBL:EFE59926.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
64_003_scaffold_36_22
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(25678..26769)
DNA (1092bp) protein (364aa)
bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; K13853 3-deoxy-7-phosphoheptulonate synthase / chorismate mutase [EC:2.5.1.54 5.4.99.5]
3-deoxy-7-phosphoheptulonate synthase {ECO:0000313|EMBL:EES35910.1}; EC=2.5.1.54 {ECO:0000313|EMBL:EES35910.1};; TaxID=525376 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis W23144.;"
Chorismate mutase/phospho-2-dehydro-3-deoxyheptonate aldolase n=62 Tax=Staphylococcus epidermidis RepID=Q5HNH2_STAEQ
64_003_scaffold_36_23
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(27204..28484)
DNA (1281bp) protein (427aa)
Smooth muscle caldesmon n=37 Tax=Staphylococcus epidermidis RepID=Q8CNV6_STAES
smooth muscle caldesmon
Uncharacterized protein {ECO:0000313|EMBL:EFE59924.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
64_003_scaffold_36_24
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(28505..28996)
DNA (492bp) protein (164aa)
UPF0478 protein SERP1299 n=81 Tax=Staphylococcus epidermidis RepID=Y1299_STAEQ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ESV19858.1}; TaxID=1344987 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis WI09.;"
64_003_scaffold_36_25
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(29071..30384)
DNA (1314bp) protein (438aa)
murC; UDP-N-acetylmuramate--L-alanine ligase (EC:6.3.2.8); K01924 UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]
UDP-N-acetylmuramate--L-alanine ligase {ECO:0000255|HAMAP-Rule:MF_00046}; EC=6.3.2.8 {ECO:0000255|HAMAP-Rule:MF_00046};; UDP-N-acetylmuramoyl-L-alanine synthetase {ECO:0000255|HAMAP-Rule:MF_00046}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
UDP-N-acetylmuramate--L-alanine ligase n=15 Tax=Staphylococcus epidermidis RepID=F3TWI8_STAEP
64_003_scaffold_36_26
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(30405..33914)
DNA (3510bp) protein (1170aa)
FtsK/SpoIIIE family protein n=23 Tax=Staphylococcus epidermidis RepID=Q5HNG8_STAEQ
FtsK/SpoIIIE family protein {ECO:0000313|EMBL:EFE59921.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
DNA translocase FtsK; K03466 DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
64_003_scaffold_36_27
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(33935..34531)
DNA (597bp) protein (199aa)
Uncharacterized protein n=53 Tax=Staphylococcus epidermidis RepID=Q5HNG7_STAEQ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAW54622.1}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
64_003_scaffold_36_28
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(34554..35408)
DNA (855bp) protein (285aa)
UPF0354 protein SERP1303 n=45 Tax=Staphylococcus epidermidis RepID=Y1303_STAEQ
hypothetical protein
UPF0354 protein HMPREF0794_0277 {ECO:0000256|HAMAP-Rule:MF_01548}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
64_003_scaffold_36_29
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(35546..35857)
DNA (312bp) protein (104aa)
Thioredoxin, putative n=52 Tax=Staphylococcus epidermidis RepID=Q5HNG5_STAEQ
thioredoxin
Thioredoxin, putative {ECO:0000313|EMBL:AAW54624.1}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
64_003_scaffold_36_30
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(35863..36948)
DNA (1086bp) protein (362aa)
M42 glutamyl aminopeptidase {ECO:0000313|EMBL:EFE59917.1}; EC=3.4.11.7 {ECO:0000313|EMBL:EFE59917.1};; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
pepA; glutamyl-aminopeptidase (EC:3.4.11.7); K01261 glutamyl aminopeptidase [EC:3.4.11.7]
M42 glutamyl aminopeptidase n=26 Tax=Staphylococcus epidermidis RepID=D4FI87_STAEP
Displaying items 1-30 of 80 in total

View Taxonomy